CF835677

Overview
NameCF835677
Unique NameCF835677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2035 contig Csv1_Contig2035:58..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.453e-38
Identity = 83/114 (72.81%), Postives = 86/114 (75.44%), Query Frame = -1
Query:  205 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 546
            A K+ +RS KAGLQFPVGRIARFLK GKYAERVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G  K
Sbjct:   13 AKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASK 126          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.122e-38
Identity = 84/114 (73.68%), Postives = 85/114 (74.56%), Query Frame = -1
Query:  205 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 546
            A KS SRS KAGLQFPVGRIARFLK GKYA RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK G  K
Sbjct:   13 AKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGASK 126          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSJ (Probable histone H2A.2 OS=Oryza sativa subsp. japonica GN=Os07g0545400 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.302e-38
Identity = 82/111 (73.87%), Postives = 88/111 (79.28%), Query Frame = -1
Query:  214 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 546
            A K++SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELS+LLG+VTIA+GGV+PNIH  LLPKK G
Sbjct:   13 AKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAG 123          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSI (Probable histone H2A.2 OS=Oryza sativa subsp. indica GN=OsI_025469 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.302e-38
Identity = 82/111 (73.87%), Postives = 88/111 (79.28%), Query Frame = -1
Query:  214 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 546
            A K++SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELS+LLG+VTIA+GGV+PNIH  LLPKK G
Sbjct:   13 AKKAMSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAG 123          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A8_ORYSI (Probable histone H2A.8 OS=Oryza sativa subsp. indica GN=OsI_036919 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.215e-37
Identity = 82/114 (71.93%), Postives = 86/114 (75.44%), Query Frame = -1
Query:  205 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 546
            A K+ SRS K GLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ LLPKK G  K
Sbjct:   13 AKKATSRSSKGGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A4_WHEAT (Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.072e-37
Identity = 82/114 (71.93%), Postives = 86/114 (75.44%), Query Frame = -1
Query:  205 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 546
            A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG  TIA+GGV+PNIHQ LLPKK    K
Sbjct:   13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKASSSK 126          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A2_PICGU (Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.144e-34
Identity = 78/120 (65.00%), Postives = 86/120 (71.67%), Query Frame = -1
Query:  178 SVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 537
            S SRS KAGL FPVGRI R L+ G YA+RVG+GAP                 AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK GKG      ASQE
Sbjct:   14 STSRSAKAGLTFPVGRIHRLLRKGNYAQRVGSGAPVYLTSVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKSGKG----DKASQE 129          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_PLAFA (Histone H2A OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.777e-34
Identity = 78/125 (62.40%), Postives = 88/125 (70.40%), Query Frame = -1
Query:  175 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 549
            KASK  S S KAGLQFPVGRI R+LK GKYA+RVGAGAP                 AGNAARDNKK+RI PRHIQLAVRNDEEL+K L  VT A+GGVLPNIH  LLPK   K +   G+A+Q++
Sbjct:   11 KASKGTSNSAKAGLQFPVGRIGRYLKKGKYAKRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRITPRHIQLAVRNDEELNKFLAGVTFASGGVLPNIHNVLLPK---KSQLKAGTANQDY 132          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A1_DEBHA (Histone H2A.1 OS=Debaryomyces hansenii GN=HTA1 PE=3 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 4.777e-34
Identity = 77/120 (64.17%), Postives = 86/120 (71.67%), Query Frame = -1
Query:  178 SVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 537
            S SRS KAGL FPVGR+ R L+ G YA+RVG+GAP                 AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  KGK     ASQE
Sbjct:   15 STSRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKSAKGK-----ASQE 129          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_MAGGR (Histone H2A OS=Magnaporthe grisea GN=HTA1 PE=2 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 6.239e-34
Identity = 77/118 (65.25%), Postives = 85/118 (72.03%), Query Frame = -1
Query:  178 SRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 531
            SRS KAGL FPVGR+ R L+ G YA+RVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK GK  G   +ASQE
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGKTAGG-KNASQE 135          
The following BLAST results are available for this feature:
BLAST of CF835677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A1_ARATH5.453e-3872.81Probable histone H2A.1 OS=Arabidopsis thaliana GN=... [more]
H2A2_ARATH7.122e-3873.68Probable histone H2A.2 OS=Arabidopsis thaliana GN=... [more]
H2A2_ORYSJ9.302e-3873.87Probable histone H2A.2 OS=Oryza sativa subsp. japo... [more]
H2A2_ORYSI9.302e-3873.87Probable histone H2A.2 OS=Oryza sativa subsp. indi... [more]
H2A8_ORYSI1.215e-3771.93Probable histone H2A.8 OS=Oryza sativa subsp. indi... [more]
H2A4_WHEAT2.072e-3771.93Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 S... [more]
H2A2_PICGU2.144e-3465.00Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=... [more]
H2A_PLAFA4.777e-3462.40Histone H2A OS=Plasmodium falciparum PE=2 SV=1[more]
H2A1_DEBHA4.777e-3464.17Histone H2A.1 OS=Debaryomyces hansenii GN=HTA1 PE=... [more]
H2A_MAGGR6.239e-3465.25Histone H2A OS=Magnaporthe grisea GN=HTA1 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01L01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01L01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835677 ID=CF835677; Name=CF835677; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTCTTTTAAATAACATGTGGAAAGCAATGGAATAATCTCAT
CACTTTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAG
AAAAAAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGT
AAAATTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGT
CACCCTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTG
GGTAAAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAA
TTCCTCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGT
TCTTCTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTCAGCA
GCGAGGTACTCAAGCACGGCAGAGAGGTAAACAGGAGCTCCGGCGCCGAC
TCGCTCAGCGTACTTTCCGGCCTTCAAAAACCTAGCGATCCTGCCCACCG
GGAACTGAAGGCCCGCCTTATGCGACCGCGAGACCGATTTCGAAGCCTTC
GGCTTACCCCTGCCGCCCTTCGTTGACCCTCCAGTTGAACTCATTCTTAT
TACAGAAAAACCCTAACCCTAGATTTCGGTTTGGTTTGAAGCGATTGAAA
G
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