CF835677

Overview
NameCF835677
Unique NameCF835677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.051e-17
Identity = 53/105 (50.48%), Postives = 65/105 (61.90%), Query Frame = -1
Query:  223 VSRSHKAGLQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 534
            VSRS +AG+QFPVGRI R LK    A  RVGA A                  AGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ K
Sbjct:   32 VSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 135          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AZ_LODEL (Histone H2A.Z OS=Lodderomyces elongisporus GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.182e-16
Identity = 55/111 (49.55%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  223 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAE---RVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 546
            A  S S S +AGLQFPVGR+ R+LK  K A+   RVG+ A                  AGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP+I++ LL K
Sbjct:   18 AKSSTSHSARAGLQFPVGRVKRYLK--KQAQNKIRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLI-KATIAYGGVLPHINKALLLK 125          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AZ_YEAST (Histone H2A.Z OS=Saccharomyces cerevisiae GN=HTZ1 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.544e-16
Identity = 54/112 (48.21%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  208 KSVSRSHKAGLQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKG 540
            +S S S +AGLQFPVGRI R+LK       RVG+ A                  AGNAA+D K  RI PRH+QLA+R D+EL  L+   TIA+GGVLP+I++ LL K   KG
Sbjct:   21 RSQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLI-RATIASGGVLPHINKALLLKVEKKG 131          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AZ_PICGU (Histone H2A.Z OS=Pichia guilliermondii GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.544e-16
Identity = 53/109 (48.62%), Postives = 66/109 (60.55%), Query Frame = -1
Query:  223 ASKSVSRSHKAGLQFPVGRIARFLK-AGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 546
            A  S S S +AGLQFPVGRI R+LK + +   RVG+ +                  AGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP+I++ LL K
Sbjct:   18 AKASTSHSARAGLQFPVGRIKRYLKRSAQNKVRVGSKSAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLI-KATIAYGGVLPHINKALLLK 125          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AZ_EMENI (Histone H2A.Z OS=Emericella nidulans GN=htz1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.544e-16
Identity = 59/118 (50.00%), Postives = 67/118 (56.78%), Query Frame = -1
Query:  199 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGD 549
            KA KS   S KAGLQFP GR+ RFLK     + RVGA A                  AGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP I++ LL K   K K D
Sbjct:   21 KAQKS--HSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPRINRALLLKVEQKKKKD 135          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AZ_PICST (Histone H2A.Z OS=Pichia stipitis GN=HTZ1 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.016e-16
Identity = 53/109 (48.62%), Postives = 65/109 (59.63%), Query Frame = -1
Query:  223 ASKSVSRSHKAGLQFPVGRIARFLK-AGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 546
            A  S S S +AGLQFPVGRI R+LK   +   RVG+ +                  AGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP+I++ LL K
Sbjct:   18 AKSSTSHSARAGLQFPVGRIKRYLKRTAQNKIRVGSKSAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLI-KATIAYGGVLPHINKALLLK 125          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AZ_GIBZE (Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.016e-16
Identity = 55/113 (48.67%), Postives = 65/113 (57.52%), Query Frame = -1
Query:  205 KSVSRSHKAGLQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 540
            K  S S +AGLQFP GR+ RFLK     + RVGA A                  AGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP+I++ LL K   K K
Sbjct:   27 KQQSHSARAGLQFPCGRVKRFLKQNTQQKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAYGGVLPHINRALLLKVEQKKK 138          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AZ_ASHGO (Histone H2A.Z OS=Ashbya gossypii GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.016e-16
Identity = 55/108 (50.93%), Postives = 67/108 (62.04%), Query Frame = -1
Query:  223 SVSRSHKAGLQFPVGRIARFLK---AGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 537
            S S S +AGLQFPVGRI R+LK   AGK   RVG+ A                  AGNAA+D K  RI PRH+QLA+R D+EL  L+   TIA+GGVLP+I++ LL K
Sbjct:   22 SQSHSARAGLQFPVGRIKRYLKKNAAGK--TRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLI-RATIASGGVLPHINKALLLK 126          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AZ_YARLI (Histone H2A.Z OS=Yarrowia lipolytica GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.439e-16
Identity = 56/115 (48.70%), Postives = 68/115 (59.13%), Query Frame = -1
Query:  223 KASKSV-----SRSHKAGLQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPK 549
            KAS +V     S S +AGLQFPVGRI R++K     + RVGA A                  AGNAARD K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+I++ LL K
Sbjct:   20 KASAAVEGAQQSHSSRAGLQFPVGRIKRYMKKSVQNKVRVGAKAAIYIAAVLEYLTAEVLELAGNAARDLKVKRITPRHLQLAIRGDEELDTLI-QATIAYGGVMPHINKALLLK 133          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AZ_SCHPO (Histone H2A.Z OS=Schizosaccharomyces pombe GN=pht1 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.439e-16
Identity = 52/103 (50.49%), Postives = 63/103 (61.17%), Query Frame = -1
Query:  229 VSRSHKAGLQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 534
            +S S +AGLQFPVGR+ RFLKA      RVGA +                  AGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP+I++ LL
Sbjct:   25 MSHSARAGLQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAGGGVLPHINKQLL 126          
The following BLAST results are available for this feature:
BLAST of CF835677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2AV2_ORYSJ9.051e-1750.48Probable histone H2A variant 2 OS=Oryza sativa sub... [more]
H2AZ_LODEL1.182e-1649.55Histone H2A.Z OS=Lodderomyces elongisporus GN=HTZ1... [more]
H2AZ_YEAST1.544e-1648.21Histone H2A.Z OS=Saccharomyces cerevisiae GN=HTZ1 ... [more]
H2AZ_PICGU1.544e-1648.62Histone H2A.Z OS=Pichia guilliermondii GN=HTZ1 PE=... [more]
H2AZ_EMENI1.544e-1650.00Histone H2A.Z OS=Emericella nidulans GN=htz1 PE=3 ... [more]
H2AZ_PICST2.016e-1648.62Histone H2A.Z OS=Pichia stipitis GN=HTZ1 PE=3 SV=2[more]
H2AZ_GIBZE2.016e-1648.67Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1[more]
H2AZ_ASHGO2.016e-1650.93Histone H2A.Z OS=Ashbya gossypii GN=HTZ1 PE=3 SV=3[more]
H2AZ_YARLI3.439e-1648.70Histone H2A.Z OS=Yarrowia lipolytica GN=HTZ1 PE=3 ... [more]
H2AZ_SCHPO3.439e-1650.49Histone H2A.Z OS=Schizosaccharomyces pombe GN=pht1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01L01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01L01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835677 ID=CF835677; Name=CF835677; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTCTTTTAAATAACATGTGGAAAGCAATGGAATAATCTCAT
CACTTTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAG
AAAAAAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGT
AAAATTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGT
CACCCTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTG
GGTAAAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAA
TTCCTCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGT
TCTTCTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTCAGCA
GCGAGGTACTCAAGCACGGCAGAGAGGTAAACAGGAGCTCCGGCGCCGAC
TCGCTCAGCGTACTTTCCGGCCTTCAAAAACCTAGCGATCCTGCCCACCG
GGAACTGAAGGCCCGCCTTATGCGACCGCGAGACCGATTTCGAAGCCTTC
GGCTTACCCCTGCCGCCCTTCGTTGACCCTCCAGTTGAACTCATTCTTAT
TACAGAAAAACCCTAACCCTAGATTTCGGTTTGGTTTGAAGCGATTGAAA
G
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