CF835677

Overview
NameCF835677
Unique NameCF835677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2035 contig Csv1_Contig2035:58..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AZ_PHANO (Histone H2A.Z OS=Phaeosphaeria nodorum GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.662e-16
Identity = 54/111 (48.65%), Postives = 64/111 (57.66%), Query Frame = -1
Query:  202 SRSHKAGLQFPVGRIARFLKA-GKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKG 531
            S S KAGLQFP GRI R L+   +   R+GA A                  AGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP+I++ LL K   K KG
Sbjct:   25 SHSAKAGLQFPCGRIKRHLRTITRQKTRIGAKASIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPHINRALLLKVEQKKKG 134          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPTN (Histone H2A.Z OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.001e-15
Identity = 55/111 (49.55%), Postives = 63/111 (56.76%), Query Frame = -1
Query:  202 SRSHKAGLQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKG 531
            S S KAGLQFP G + RFLK     + RVGA A                  AGNAA+D K  RI PRH+QLA+R DEEL  L+   TIA GGVLP I++ LL K   K KG
Sbjct:   25 SHSAKAGLQFPRGSVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLI-RATIAFGGVLPRINRALLLKVEQKKKG 134          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AX_DICDI (Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.465e-14
Identity = 50/121 (41.32%), Postives = 62/121 (51.24%), Query Frame = -1
Query:  181 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQ 543
            SK  SRS +AG+ FPV R+ R L+ G++A RV + AP                 A N    +KK RI P+HI  AV ND EL+ L   VTIA GGVLP   Q+   KK    K     +SQ
Sbjct:   32 SKPESRSARAGITFPVSRVDRLLREGRFAPRVESTAPVYLAAVLEYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLPTPQQSTGEKKKKPSKKAAEGSSQ 152          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A1_LEIIN (Histone H2A.1 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.559e-13
Identity = 44/112 (39.29%), Postives = 64/112 (57.14%), Query Frame = -1
Query:  211 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGA-GAPXXXXXXXXXXXXXXXXXAGNAARDNKKN-RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 540
            KS S+S K GL FPVGR+   ++ G+YA R+GA GA                     AA+  KK  R+ PR + LA R+D+++  LL +VT+++ GV+PNI + +  KK GK
Sbjct:   13 KSGSKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPNISKAMAKKKGGK 124          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_TRYCR (Histone H2A OS=Trypanosoma cruzi PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.649e-13
Identity = 46/119 (38.66%), Postives = 63/119 (52.94%), Query Frame = -1
Query:  205 KASKSVS--RSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKN--RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 549
            KASK  S  RS KAGL FPVGR+   L+ G+YA R+GA                    +  AA    K   R+ PR + LAVR+D++L  LL  VT++ GGV+P++++ L  K     K
Sbjct:   10 KASKKRSGGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAASQQAKKPKRLTPRTVTLAVRHDDDLGMLLKDVTLSRGGVMPSLNKALAKKHKSSKK 128          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A2_LEIIN (Histone H2A.2 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.036e-12
Identity = 43/114 (37.72%), Postives = 65/114 (57.02%), Query Frame = -1
Query:  211 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGA-GAPXXXXXXXXXXXXXXXXXAGNAARDNKKN-RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 546
            A KS S+S K GL FPVGR+   ++ G+YA R+GA GA                     AA+  KK  R+ PR + LA R+D+++  LL +VT+++ GV+P++ + +  KK GK
Sbjct:   11 ARKSGSKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPSVSKAVAKKKGGK 124          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A2_LILLO (Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.353e-12
Identity = 44/108 (40.74%), Postives = 56/108 (51.85%), Query Frame = -1
Query:  220 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 543
            S+   RS KA LQF V R+   LK G+Y  R+GA AP                 A N    +K+  I PRHI LAVRND E++KL   VTI+  GV+P   + L  +K
Sbjct:   13 SRRKLRSEKAALQFSVSRVEYSLKKGRYCRRLGATAPVYLAAVLENLVAEVLEMAANVTEKHKRIVIKPRHIMLAVRNDVEVNKLFHGVTISASGVVPKTRKELDRRK 120          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_OLILU (Histone H2A (Fragment) OS=Olisthodiscus luteus PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.766e-12
Identity = 43/67 (64.18%), Postives = 48/67 (71.64%), Query Frame = -1
Query:  244 AGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNI 444
            AGAP     XXX       X AGNAARDNKK+RI+PRH+QLAV     L+KLLG+VTIA GGVLPNI
Sbjct:    1 AGAPVYLAAXXXYLTAEILXLAGNAARDNKKSRIIPRHVQLAVXXXXXLNKLLGNVTIAQGGVLPNI 67          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AV1_DICDI (Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = -1
Query:  214 SRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL--PKKMG 531
            SRS +A L FPV RI + ++ G++ +R  + AP                 +   A    K RI P+HI L++  D EL+ LL +VTIANGGV   IH  LL  PKK G
Sbjct:  132 SRSARADLTFPVSRIEKMIREGRFTKRCSSDAPVFLAAVLEYLTLEILELSITYANQKNKTRITPQHIHLSICCDAELNDLLKNVTIANGGVPKFIHPILLDTPKKKG 239          
The following BLAST results are available for this feature:
BLAST of CF835677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2AZ_PHANO7.662e-1648.65Histone H2A.Z OS=Phaeosphaeria nodorum GN=HTZ1 PE=... [more]
H2AZ_ASPTN1.001e-1549.55Histone H2A.Z OS=Aspergillus terreus (strain NIH 2... [more]
H2AX_DICDI2.465e-1441.32Histone H2A.x OS=Dictyostelium discoideum GN=H2AX ... [more]
H2A1_LEIIN3.559e-1339.29Histone H2A.1 OS=Leishmania infantum PE=2 SV=1[more]
H2A_TRYCR4.649e-1338.66Histone H2A OS=Trypanosoma cruzi PE=3 SV=2[more]
H2A2_LEIIN1.036e-1237.72Histone H2A.2 OS=Leishmania infantum PE=2 SV=1[more]
H2A2_LILLO1.353e-1240.74Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 S... [more]
H2A_OLILU1.766e-1264.18Histone H2A (Fragment) OS=Olisthodiscus luteus PE=... [more]
H2AV1_DICDI6.712e-1239.81Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01L01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01L01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835677 ID=CF835677; Name=CF835677; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTCTTTTAAATAACATGTGGAAAGCAATGGAATAATCTCAT
CACTTTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAG
AAAAAAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGT
AAAATTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGT
CACCCTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTG
GGTAAAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAA
TTCCTCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGT
TCTTCTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTCAGCA
GCGAGGTACTCAAGCACGGCAGAGAGGTAAACAGGAGCTCCGGCGCCGAC
TCGCTCAGCGTACTTTCCGGCCTTCAAAAACCTAGCGATCCTGCCCACCG
GGAACTGAAGGCCCGCCTTATGCGACCGCGAGACCGATTTCGAAGCCTTC
GGCTTACCCCTGCCGCCCTTCGTTGACCCTCCAGTTGAACTCATTCTTAT
TACAGAAAAACCCTAACCCTAGATTTCGGTTTGGTTTGAAGCGATTGAAA
G
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