CF835677

Overview
NameCF835677
Unique NameCF835677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2035 contig Csv1_Contig2035:58..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_YARLI (Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.007e-32
Identity = 76/121 (62.81%), Postives = 86/121 (71.07%), Query Frame = -1
Query:  178 SVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKG-KGDIGSASQE 537
            S SRS KA L FPVGR+ R L+ G YA+R+GAGAP                 +GNAARDNKK+RIVPRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLP+K  KG KG    ASQE
Sbjct:   18 SKSRSAKADLTFPVGRVHRLLRKGNYAQRIGAGAPIYLAAVLEYLAVEILELSGNAARDNKKSRIVPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPRKSAKGAKG----ASQE 134          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.007e-32
Identity = 73/121 (60.33%), Postives = 84/121 (69.42%), Query Frame = -1
Query:  178 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 540
            K VSRS KAGLQFPVGRI R+LK G+YA+RVG GAP                 AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK  +       AS++
Sbjct:   24 KPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKADKPAKASKD 144          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.007e-32
Identity = 73/121 (60.33%), Postives = 84/121 (69.42%), Query Frame = -1
Query:  178 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 540
            K VSRS KAGLQFPVGRI R+LK G+YA+RVG GAP                 AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK  +       AS++
Sbjct:   24 KPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKADKPAKASKD 144          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.007e-32
Identity = 72/108 (66.67%), Postives = 80/108 (74.07%), Query Frame = -1
Query:  220 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 543
            SK+ SRS +AGLQFPVGR+ RFL+ G YA RVGAGAP                 AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   12 SKAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 119          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32
Identity = 71/109 (65.14%), Postives = 79/109 (72.48%), Query Frame = -1
Query:  214 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 540
            K+ SRS +AGLQFPVGR+ RFL+ G YA RVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK G
Sbjct:   13 KAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTG 121          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32
Identity = 73/117 (62.39%), Postives = 82/117 (70.09%), Query Frame = -1
Query:  190 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGS 540
            KSVSRS KAGLQFPVGRI R+LK G+YA+ VG GAP                 AGNAARDNKK RI+PRH+ LA+RNDEEL KLLG VTIA+GGVLPNI+  LLPKK  +     GS
Sbjct:   27 KSVSRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKTAEKASSGGS 143          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32
Identity = 71/120 (59.17%), Postives = 84/120 (70.00%), Query Frame = -1
Query:  181 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQ 540
            K+VSRS KAGLQFPVGRI R+LK G+YA+R+G GAP                 AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK  +     G  ++
Sbjct:   27 KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKAAAAGKEAK 146          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32
Identity = 71/120 (59.17%), Postives = 84/120 (70.00%), Query Frame = -1
Query:  181 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQ 540
            K+VSRS KAGLQFPVGRI R+LK G+YA+R+G GAP                 AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK  +     G  ++
Sbjct:   27 KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKAAAAGKEAK 146          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32
Identity = 71/109 (65.14%), Postives = 79/109 (72.48%), Query Frame = -1
Query:  214 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 540
            K+ SRS +AGLQFPVGR+ RFL+ G YA RVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK G
Sbjct:   13 KAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTG 121          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32
Identity = 74/120 (61.67%), Postives = 84/120 (70.00%), Query Frame = -1
Query:  181 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQ 540
            KSV+RS +AGLQFPVGRI R+LK G+YA+RVG GAP                 AGNAARDNKKNRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLPKK  K      S S+
Sbjct:   21 KSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKNEKAATTTKSPSK 140          
The following BLAST results are available for this feature:
BLAST of CF835677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A_YARLI2.007e-3262.81Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV... [more]
H2A6_ORYSJ2.007e-3260.33Probable histone H2A.6 OS=Oryza sativa subsp. japo... [more]
H2A6_ORYSI2.007e-3260.33Probable histone H2A.6 OS=Oryza sativa subsp. indi... [more]
H2A4_PSAMI2.007e-3266.67Late histone H2A.2.2 OS=Psammechinus miliaris PE=3... [more]
H2A_PARAN2.621e-3265.14Histone H2A, gonadal OS=Parechinus angulosus PE=1 ... [more]
H2A_MAIZE2.621e-3262.39Histone H2A OS=Zea mays PE=2 SV=1[more]
H2A5_ORYSJ2.621e-3259.17Probable histone H2A.5 OS=Oryza sativa subsp. japo... [more]
H2A5_ORYSI2.621e-3259.17Probable histone H2A.5 OS=Oryza sativa subsp. indi... [more]
H2A3_PSAMI2.621e-3265.14Late histone H2A.3, gonadal OS=Psammechinus miliar... [more]
H2A1_MEDTR2.621e-3261.67Probable histone H2A.1 OS=Medicago truncatula GN=M... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01L01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01L01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835677 ID=CF835677; Name=CF835677; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTCTTTTAAATAACATGTGGAAAGCAATGGAATAATCTCAT
CACTTTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAG
AAAAAAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGT
AAAATTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGT
CACCCTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTG
GGTAAAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAA
TTCCTCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGT
TCTTCTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTCAGCA
GCGAGGTACTCAAGCACGGCAGAGAGGTAAACAGGAGCTCCGGCGCCGAC
TCGCTCAGCGTACTTTCCGGCCTTCAAAAACCTAGCGATCCTGCCCACCG
GGAACTGAAGGCCCGCCTTATGCGACCGCGAGACCGATTTCGAAGCCTTC
GGCTTACCCCTGCCGCCCTTCGTTGACCCTCCAGTTGAACTCATTCTTAT
TACAGAAAAACCCTAACCCTAGATTTCGGTTTGGTTTGAAGCGATTGAAA
G
back to top