CF835677
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_YARLI (Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV=3) HSP 1 Score: 139.043 bits (349), Expect = 2.007e-32 Identity = 76/121 (62.81%), Postives = 86/121 (71.07%), Query Frame = -1 Query: 178 SVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKG-KGDIGSASQE 537 S SRS KA L FPVGR+ R L+ G YA+R+GAGAP +GNAARDNKK+RIVPRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLP+K KG KG ASQE Sbjct: 18 SKSRSAKADLTFPVGRVHRLLRKGNYAQRIGAGAPIYLAAVLEYLAVEILELSGNAARDNKKSRIVPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPRKSAKGAKG----ASQE 134
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 2.007e-32 Identity = 73/121 (60.33%), Postives = 84/121 (69.42%), Query Frame = -1 Query: 178 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 540 K VSRS KAGLQFPVGRI R+LK G+YA+RVG GAP AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLPKK + AS++ Sbjct: 24 KPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKADKPAKASKD 144
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 2.007e-32 Identity = 73/121 (60.33%), Postives = 84/121 (69.42%), Query Frame = -1 Query: 178 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 540 K VSRS KAGLQFPVGRI R+LK G+YA+RVG GAP AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLPKK + AS++ Sbjct: 24 KPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKADKPAKASKD 144
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 2.007e-32 Identity = 72/108 (66.67%), Postives = 80/108 (74.07%), Query Frame = -1 Query: 220 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 543 SK+ SRS +AGLQFPVGR+ RFL+ G YA RVGAGAP AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLPKK Sbjct: 12 SKAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 119
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2) HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32 Identity = 71/109 (65.14%), Postives = 79/109 (72.48%), Query Frame = -1 Query: 214 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 540 K+ SRS +AGLQFPVGR+ RFL+ G YA RVGAGAP AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI LLPKK G Sbjct: 13 KAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTG 121
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32 Identity = 73/117 (62.39%), Postives = 82/117 (70.09%), Query Frame = -1 Query: 190 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGS 540 KSVSRS KAGLQFPVGRI R+LK G+YA+ VG GAP AGNAARDNKK RI+PRH+ LA+RNDEEL KLLG VTIA+GGVLPNI+ LLPKK + GS Sbjct: 27 KSVSRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKTAEKASSGGS 143
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32 Identity = 71/120 (59.17%), Postives = 84/120 (70.00%), Query Frame = -1 Query: 181 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQ 540 K+VSRS KAGLQFPVGRI R+LK G+YA+R+G GAP AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLPKK + G ++ Sbjct: 27 KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKAAAAGKEAK 146
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32 Identity = 71/120 (59.17%), Postives = 84/120 (70.00%), Query Frame = -1 Query: 181 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQ 540 K+VSRS KAGLQFPVGRI R+LK G+YA+R+G GAP AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLPKK + G ++ Sbjct: 27 KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEKAAAAGKEAK 146
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2) HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32 Identity = 71/109 (65.14%), Postives = 79/109 (72.48%), Query Frame = -1 Query: 214 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 540 K+ SRS +AGLQFPVGR+ RFL+ G YA RVGAGAP AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI LLPKK G Sbjct: 13 KAKSRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTG 121
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32 Identity = 74/120 (61.67%), Postives = 84/120 (70.00%), Query Frame = -1 Query: 181 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQ 540 KSV+RS +AGLQFPVGRI R+LK G+YA+RVG GAP AGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLPKK K S S+ Sbjct: 21 KSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKNEKAATTTKSPSK 140 The following BLAST results are available for this feature:
BLAST of CF835677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835677 ID=CF835677; Name=CF835677; organism=Citrus sinensis; type=EST; length=651bpback to top |