CF835677

Overview
NameCF835677
Unique NameCF835677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2035 contig Csv1_Contig2035:58..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32
Identity = 70/109 (64.22%), Postives = 80/109 (73.39%), Query Frame = -1
Query:  214 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 540
            K VSRS KAGLQFPVGRI R+LK G+Y++R+G GAP                 AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK G
Sbjct:   25 KPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTG 133          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSI (Probable histone H2A.4 OS=Oryza sativa subsp. indica GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32
Identity = 70/109 (64.22%), Postives = 80/109 (73.39%), Query Frame = -1
Query:  214 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 540
            K VSRS KAGLQFPVGRI R+LK G+Y++R+G GAP                 AGNAARDNKKNRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK G
Sbjct:   25 KPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTG 133          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.471e-32
Identity = 72/112 (64.29%), Postives = 79/112 (70.54%), Query Frame = -1
Query:  205 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 540
            KS SRS +AGLQFPVGRI R L+ G YAER+GAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K K
Sbjct:   13 KSKSRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQKSK 124          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.471e-32
Identity = 73/113 (64.60%), Postives = 81/113 (71.68%), Query Frame = -1
Query:  211 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 549
            + +KS SRS +AGLQFPVGRI R L+ G YAERVGAGAP                 AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   10 QGTKSKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTEK 122          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 4.471e-32
Identity = 72/122 (59.02%), Postives = 83/122 (68.03%), Query Frame = -1
Query:  178 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 543
            +K+ +RS +AGLQFPVGR+ R L+ G YA RVGAGAP                 AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK   G    G  S +
Sbjct:   13 AKAKTRSSRAGLQFPVGRVHRLLRKGNYAHRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSSGGVSTSGKKSSQ 134          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A2_SCHPO (Histone H2A-beta OS=Schizosaccharomyces pombe GN=hta2 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.471e-32
Identity = 71/114 (62.28%), Postives = 82/114 (71.93%), Query Frame = -1
Query:  205 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 546
            A  + SRS KAGL FPVGR+ R L+ G YA+RVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI+  LLPK+ GKGK
Sbjct:   13 AKSAQSRSAKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGK 126          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.471e-32
Identity = 71/107 (66.36%), Postives = 80/107 (74.77%), Query Frame = -1
Query:  220 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 540
            KSV+RS +AGLQFPVGRI R+LK G+YA+RVG GAP                 AGNAARDNKKNRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLPKK
Sbjct:   22 KSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 128          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A1_PICGU (Histone H2A.1 OS=Pichia guilliermondii GN=HTA1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.471e-32
Identity = 75/120 (62.50%), Postives = 84/120 (70.00%), Query Frame = -1
Query:  178 SVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 537
            S SRS KAGL FPVGRI R L+ G YA+RVG+GAP                 AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ+LLP K       I  ASQE
Sbjct:   15 STSRSAKAGLTFPVGRIHRLLRKGNYAQRVGSGAPVYLTSVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLLPSKK-----SIKGASQE 129          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_USTMA (Histone H2A OS=Ustilago maydis GN=HTA1 PE=3 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 5.840e-32
Identity = 74/119 (62.18%), Postives = 84/119 (70.59%), Query Frame = -1
Query:  190 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGS 546
            +SK+ SRS KAGLQFPVGRI R L+ G YA+RVGAGAP                 AGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTI+ GGVLP I   LLP K GK K   GS
Sbjct:   15 SSKAQSRSAKAGLQFPVGRIHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGGVTISQGGVLPFIQSELLPAKSGKPKKAGGS 133          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A7_ARATH (Probable histone H2A.7 OS=Arabidopsis thaliana GN=At5g59870 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.840e-32
Identity = 70/108 (64.81%), Postives = 81/108 (75.00%), Query Frame = -1
Query:  220 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 543
            +KSVS+S KAGLQFPVGRI RFLK G+YA+R+G GAP                 AGNAARDNKK+RI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK
Sbjct:   22 TKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKK 129          
The following BLAST results are available for this feature:
BLAST of CF835677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A4_ORYSJ3.424e-3264.22Probable histone H2A.4 OS=Oryza sativa subsp. japo... [more]
H2A4_ORYSI3.424e-3264.22Probable histone H2A.4 OS=Oryza sativa subsp. indi... [more]
H2A_SIPNU4.471e-3264.29Histone H2A OS=Sipunculus nudus PE=1 SV=2[more]
H2A_ACRFO4.471e-3264.60Histone H2A OS=Acropora formosa PE=3 SV=2[more]
H2AX_XENLA4.471e-3259.02Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3[more]
H2A2_SCHPO4.471e-3262.28Histone H2A-beta OS=Schizosaccharomyces pombe GN=h... [more]
H2A2_MEDTR4.471e-3266.36Probable histone H2A.2 OS=Medicago truncatula GN=M... [more]
H2A1_PICGU4.471e-3262.50Histone H2A.1 OS=Pichia guilliermondii GN=HTA1 PE=... [more]
H2A_USTMA5.840e-3262.18Histone H2A OS=Ustilago maydis GN=HTA1 PE=3 SV=3[more]
H2A7_ARATH5.840e-3264.81Probable histone H2A.7 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01L01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01L01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835677 ID=CF835677; Name=CF835677; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTCTTTTAAATAACATGTGGAAAGCAATGGAATAATCTCAT
CACTTTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAG
AAAAAAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGT
AAAATTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGT
CACCCTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTG
GGTAAAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAA
TTCCTCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGT
TCTTCTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTCAGCA
GCGAGGTACTCAAGCACGGCAGAGAGGTAAACAGGAGCTCCGGCGCCGAC
TCGCTCAGCGTACTTTCCGGCCTTCAAAAACCTAGCGATCCTGCCCACCG
GGAACTGAAGGCCCGCCTTATGCGACCGCGAGACCGATTTCGAAGCCTTC
GGCTTACCCCTGCCGCCCTTCGTTGACCCTCCAGTTGAACTCATTCTTAT
TACAGAAAAACCCTAACCCTAGATTTCGGTTTGGTTTGAAGCGATTGAAA
G
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