CF835689

Overview
NameCF835689
Unique NameCF835689
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_NEUCR (Protein transport protein sec-13 OS=Neurospora crassa GN=sec-13 PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.075e-23
Identity = 72/151 (47.68%), Postives = 94/151 (62.25%), Query Frame = -1
Query:  308 PAMAPGALV----GWGLLDPVQKLASCGCDNTVKVWKM---YNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT--CAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 730
            PA  PG++V    G G     ++  + G DN +K+W      NG +K++  P L  H+DWVR VAW+P + L KS IASASQD TV IWT   A  GE W+ +VL +F   VW VSWSL+GN+LA +  NN VTLWKE + GEW+ V  +E
Sbjct:  159 PATTPGSIVSSNPGPGSTGN-RRFVTGGSDNLLKIWTFDPATNG-YKLEREP-LAGHTDWVRDVAWSPTV-LQKSYIASASQDKTVRIWTSDAANPGE-WKCKVL-NFDAAVWRVSWSLSGNVLAASSDNNKVTLWKENLKGEWENVKTIE 303          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_LODEL (Protein transport protein SEC13 OS=Lodderomyces elongisporus GN=SEC13 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.539e-23
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = -1
Query:  308 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 679
            ++  +CG DN VK+WK    +        L+ H+DWVR VAW+P+  L +  IA+ASQD TV+IWT  K+G+ W+ + L + K P   W  SWSL+GN+LAV+  +N VTLWKE + G+W+    VE
Sbjct:  177 RRFVTCGSDNLVKIWKYDTALETYAEEAKLEGHTDWVRDVAWSPS-NLVRPYIATASQDCTVLIWTQDKDGK-WQSQPLTEEKFPDVCWRCSWSLSGNILAVSGGDNKVTLWKENLQGKWESAGEVE 301          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_ASPCL (Protein transport protein sec13 OS=Aspergillus clavatus GN=sec13 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.539e-23
Identity = 64/144 (44.44%), Postives = 88/144 (61.11%), Query Frame = -1
Query:  308 PAMAPGALVGWGLLDPVQK-LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 730
            PA APG+L+        Q+   + G DN +K+W         +    L+ HSDWVR VAW+P++ L KS IASASQD TV IWT  A    QW  + L +F T +W VSWS +GN+LAV+  +N V+LWKE + G+W++V  +E
Sbjct:  153 PAAAPGSLISSNPGPGQQRRFVTGGSDNLLKIWDYNPESKTYNITQTLEGHSDWVRDVAWSPSI-LSKSYIASASQDKTVRIWTSDASNPGQWTSQQL-EFDTVLWRVSWSPSGNILAVSGGDNKVSLWKENLKGQWEKVKDIE 294          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_ASPOR (Protein transport protein sec13 OS=Aspergillus oryzae GN=sec13 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.037e-23
Identity = 62/144 (43.06%), Postives = 88/144 (61.11%), Query Frame = -1
Query:  308 PAMAPGALVGWGLLDPVQK-LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 730
            PA +PG+L+        Q+   + G DN +K+W   +     +    L+ HSDWVR VAW+P++ L KS IASASQD TV IWT       QW  + L +F T +W VSWS +GN+LAV+  +N V+LWKE + G+W++V  +E
Sbjct:  152 PAASPGSLISANPGPGQQRRFVTGGSDNLLKIWDYNSETKSYNLSQTLEGHSDWVRDVAWSPSI-LSKSYIASASQDKTVRIWTSDVSNPGQWASQQL-EFDTVLWRVSWSPSGNILAVSGGDNKVSLWKENLKGQWEKVKDIE 293          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_ASPNC (Protein transport protein sec13 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec13 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.037e-23
Identity = 64/144 (44.44%), Postives = 88/144 (61.11%), Query Frame = -1
Query:  308 PAMAPGALVGWGLLDPVQK-LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 730
            PA APG+L+        Q+   + G DN +K+W         +    L+ HSDWVR VAW+P++ L KS IASASQD TV IWT  A    QW  + L +F T +W VSWS +GN+LAV+  +N V+LWKE + G+W++V  +E
Sbjct:  166 PAAAPGSLISSNPGPGQQRRFVTGGSDNLLKIWDYNPETKTYNNTQTLEGHSDWVRDVAWSPSV-LSKSYIASASQDKTVRIWTSDASNPGQWTSQQL-EFDTVLWRVSWSPSGNILAVSGGDNKVSLWKENLKGQWEKVKDIE 307          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_ASPTN (Protein transport protein sec13 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sec13 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.884e-23
Identity = 63/144 (43.75%), Postives = 88/144 (61.11%), Query Frame = -1
Query:  308 PAMAPGALVGWGLLDPVQK-LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 730
            PA APG+L+        Q+   + G DN +K+W         +    L+ HSDWVR VAW+P++ L KS IASASQD TV IWT  A    QW  + L +F + +W VSWS +GN+LAV+  +N V+LWKE + G+W++V  +E
Sbjct:  167 PAAAPGSLISANPGPGQQRRFVTGGSDNLLKIWDYNPETKTYNLSQTLEGHSDWVRDVAWSPSI-LSKSYIASASQDKTVRIWTSDASNPGQWTSQQL-EFDSVLWRVSWSPSGNILAVSGGDNKVSLWKENLKGQWEKVKDIE 308          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_ASPFU (Protein transport protein sec13 OS=Aspergillus fumigatus GN=sec13 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.884e-23
Identity = 63/144 (43.75%), Postives = 88/144 (61.11%), Query Frame = -1
Query:  308 PAMAPGALVGWGLLDPVQK-LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 730
            PA +PG+L+        Q+   + G DN +K+W         +    L+ HSDWVR VAW+P++ L KS IASASQD TV IWT  A    QW  + L +F T +W VSWS +GN+LAV+  +N V+LWKE + G+W++V  +E
Sbjct:  164 PAASPGSLISSNPGPGQQRRFVTGGSDNLLKIWDYNPESKTYNLSQTLEGHSDWVRDVAWSPSI-LSKSYIASASQDKTVRIWTSDASNPGQWTSQQL-EFDTVLWRVSWSPSGNILAVSGGDNKVSLWKENLKGQWEKVKDIE 305          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_SCHPO (Protein transport protein sec13 OS=Schizosaccharomyces pombe GN=sec13 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.345e-22
Identity = 63/139 (45.32%), Postives = 83/139 (59.71%), Query Frame = -1
Query:  326 PAMAPGALVGWGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE-QWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQ 730
            P    G++VG       +KLA+ GCDN VK+W    G+        L  H DW R VAWAP++GL K+ +ASASQD  V IWT  KEG+  W+   L + K P   W VSWSL+GN+LAV+  +N V L+KE+   +WQ
Sbjct:  155 PPSLSGSVVGQSPAAGPKKLATAGCDNLVKIWAFDAGVNNWILEDTLAGHVDWTRDVAWAPSVGLTKTYLASASQDKNVFIWT--KEGDGPWQKTPLTEEKFPDIAWRVSWSLSGNILAVSCGDNKVYLFKES-QNKWQ 290          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_YEAST (Protein transport protein SEC13 OS=Saccharomyces cerevisiae GN=SEC13 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.294e-22
Identity = 55/126 (43.65%), Postives = 78/126 (61.90%), Query Frame = -1
Query:  311 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 679
            +K  + G DN VK+WK  +          L+ HSDWVR VAW+P + L +S +AS SQD T +IWT   E   W+  +LK+ K P  +W  SWSL+GN+LA++  +N VTLWKE ++G+W+    V
Sbjct:  171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 295          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_KLULA (Protein transport protein SEC13 OS=Kluyveromyces lactis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.996e-22
Identity = 54/127 (42.52%), Postives = 80/127 (62.99%), Query Frame = -1
Query:  311 VQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 682
            V++  + G DN VK+WK  +          L+ HSDWVR VAW+P + L +S +AS SQD T +IWT   + + W+  +LK+ K P  +W  SWSL+GN+LA++  +N VTLWKE ++G+W+    V
Sbjct:  175 VRRFVTGGADNLVKIWKYNSDAATYLLEHTLEGHSDWVRDVAWSPTV-LSRSYLASVSQDRTCIIWTQDSKEDTWKKTLLKEDKFPDVLWRASWSLSGNILALSCGDNTVTLWKENLEGKWEPAGQV 300          
The following BLAST results are available for this feature:
BLAST of CF835689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
SEC13_NEUCR2.075e-2347.68Protein transport protein sec-13 OS=Neurospora cra... [more]
SEC13_LODEL3.539e-2344.88Protein transport protein SEC13 OS=Lodderomyces el... [more]
SEC13_ASPCL3.539e-2344.44Protein transport protein sec13 OS=Aspergillus cla... [more]
SEC13_ASPOR6.037e-2343.06Protein transport protein sec13 OS=Aspergillus ory... [more]
SEC13_ASPNC6.037e-2344.44Protein transport protein sec13 OS=Aspergillus nig... [more]
SEC13_ASPTN7.884e-2343.75Protein transport protein sec13 OS=Aspergillus ter... [more]
SEC13_ASPFU7.884e-2343.75Protein transport protein sec13 OS=Aspergillus fum... [more]
SEC13_SCHPO1.345e-2245.32Protein transport protein sec13 OS=Schizosaccharom... [more]
SEC13_YEAST2.294e-2243.65Protein transport protein SEC13 OS=Saccharomyces c... [more]
SEC13_KLULA2.996e-2242.52Protein transport protein SEC13 OS=Kluyveromyces l... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01L11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835689 ID=CF835689; Name=CF835689; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTTTTTTTTTTTGCACAAATCCTTGAAATCACCTTTAAAGGCCAA
AGAGTTCATATGTAATTTAACAGAAACCTTGGCAGTCACAAATACAGACG
TATGGATGGAGATTAAGACACCATCATTTGTTTCTGAATCTGGCAAGAAA
GAATAACAACTAACCAAATACAAATTAAGTATTCAAACAAAATCAATCCA
ACCCAAAAAAAAACTAAACCAGGTGTAAGAAAGGCTACTTCCAATAAGTC
CAAAAGAGAACACAATGATTGTGAAAGGGTAAGTAGGAAGACACCTTATG
TCTGTGGCTCGACTACACTCACTTGTTGCCACTCACCATCAACAGCTTCC
TTCCACAATGTCACATTATTTGCATCAGCCACAGCCAACAAATTTCCAGT
CAGTGACCACGAAACACTCCAAACTGGTGTCTTAAAATCCTTCAAAACTC
GACCCTCCCATTGCTCCCCTTCCTTGGCACAGGTCCAAATAACAACTGTC
CCATCCTGTGATGCACTTGCAATTGTGGATTTTGGAAGACCCAAGTTGGG
TGCCCATGCCACGCTCCGCACCCAATCACTGTGCATCTGAAGGGCAGGGA
AGCAATCCATCTTCCAAATCCCATTATACATCTTCCACACCTTTACAGTA
TTATCACAACCACAAGAAGCCAATTTCTGAACAGGATCCAGTAAGCCCCA
TCCAACTAAAGCACCAGGAGCCATTGCCGG
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