CF835689

Overview
NameCF835689
Unique NameCF835689
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_ASHGO (Protein transport protein SEC13 OS=Ashbya gossypii GN=SEC13 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.996e-22
Identity = 52/128 (40.62%), Postives = 81/128 (63.28%), Query Frame = -1
Query:  308 VQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 682
            ++++A+ G DN VK+WK             L  H+DWVR VAW+P++ LP++ +A+ SQD T +IWT       W   +LK+ K P  +W  SWSL+GN+LA++  +N VTLWKE ++G+W+  + +E
Sbjct:  168 LRRIATGGADNLVKIWKYNPEANTYLLEDTLAAHADWVRDVAWSPSV-LPRAYLATVSQDRTCIIWTQENNQGPWTKTLLKEDKFPDVLWRASWSLSGNILALSGGDNKVTLWKENLEGKWESAAEIE 294          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_CHAGB (Protein transport protein SEC13 OS=Chaetomium globosum GN=SEC13 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.913e-22
Identity = 66/149 (44.30%), Postives = 89/149 (59.73%), Query Frame = -1
Query:  308 PAMAPGALVGWGLLDPV----QKLASCGCDNTVKVWKM--YNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG-EQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 730
            PA  PG++V      P     ++  + G DN +K+W      G +K++  P L  H+DWVR VAW+P + L KS IASAS+D TV IWT      +QW  +VL  F   VW VSWSL+GN+LA +  +N VTLWKE + GEW+ V  +E
Sbjct:  145 PATNPGSIVS-SKPSPKSTGNRRFVTGGSDNALKIWAFDAATGAYKLEREP-LTGHTDWVRDVAWSPTV-LQKSYIASASEDRTVRIWTSDPANPQQWNCKVL-GFDAAVWRVSWSLSGNVLAASGGDNKVTLWKENLKGEWECVKSIE 289          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_CANAL (Protein transport protein SEC13 OS=Candida albicans GN=SEC13 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.111e-22
Identity = 56/129 (43.41%), Postives = 85/129 (65.89%), Query Frame = -1
Query:  308 QKLASCGCDNTVKVWKM--YNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 679
            +++ SCG DN  K+WK    N  +  +    L+ H+DWVR VAW+P+  L +S IA+ASQD TV+IWT  ++G +W+ ++L + K P   W  SWSL+GN+LAV+  +N V+LWKE + G+W+    V+
Sbjct:  173 RRIVSCGSDNLAKIWKYDAANNTYVEEA--KLEGHTDWVRDVAWSPS-NLIRSYIATASQDRTVLIWTQDRDG-KWQKQLLTEEKFPDVCWRCSWSLSGNILAVSGGDNKVSLWKENLQGKWESAGEVD 297          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_COCIM (Protein transport protein SEC13 OS=Coccidioides immitis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.536e-21
Identity = 58/144 (40.28%), Postives = 85/144 (59.03%), Query Frame = -1
Query:  308 PAMAPGALVG-WGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG-EQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 730
            PA APG+++        +++  + G DN VK+W              L+ H+ WVR V+W+P++ L +S IASASQD TV IWT       +W    L +F   VW VSWSL+GN+LAV+  +N V+LWKE + G+W++V  +E
Sbjct:  162 PAAAPGSVISATPSTGQIRRFVTGGSDNLVKIWDYNPETKTYATSHVLEGHTGWVRDVSWSPSI-LSRSYIASASQDKTVRIWTSDPSNPNEWTSHQL-EFDAVVWRVSWSLSGNILAVSGGDNKVSLWKENLKGQWEKVKDIE 303          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_PICST (Protein transport protein SEC13 OS=Pichia stipitis GN=SEC13 PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.313e-21
Identity = 55/128 (42.97%), Postives = 83/128 (64.84%), Query Frame = -1
Query:  311 QKLASCGCDNTVKVWKM--YNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 679
            ++  +CG DN  K+WK    N  +  +    L+ H+DWVR VAW+P++ L ++ IA+ASQD TV+IWT  K G +W+ ++L + K P   W  SWSL+GN+LAV+  +N V+LWKE + G+W+    V
Sbjct:  177 RRFVTCGSDNLAKIWKYDAANNTYVEEA--RLEGHTDWVRDVAWSPSM-LVRTYIATASQDRTVLIWTQDKAG-KWQKQLLTEDKFPDVCWRCSWSLSGNILAVSGGDNKVSLWKENLQGKWESAGEV 300          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_DEBHA (Protein transport protein SEC13 OS=Debaryomyces hansenii GN=SEC13 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.638e-21
Identity = 52/128 (40.62%), Postives = 80/128 (62.50%), Query Frame = -1
Query:  308 VQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD--FKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 682
            +++  +CG DN  K+WK  +          L+ H+DWVR V W+P++ L +S IA+ASQD TV+IW+    G+ W+ ++L +  F    W  SWSL+GN+LAV+  +N V+LWKE + G+W+    VE
Sbjct:  172 IRRFVTCGSDNLAKIWKFDSSKNAYIEEAVLEGHTDWVRDVCWSPSI-LIRSYIATASQDRTVLIWSQDNNGK-WQKQLLTEEMFPDVCWRCSWSLSGNILAVSGGDNKVSLWKENLQGKWESAGEVE 297          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_PHANO (Protein transport protein SEC13 OS=Phaeosphaeria nodorum GN=SEC13 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.644e-20
Identity = 60/144 (41.67%), Postives = 81/144 (56.25%), Query Frame = -1
Query:  308 PAMAPGALVG--WGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 730
            PA+APG +V          ++  + G D  VK+W              L  H+DWVR VAW+P + L KS IASASQD TV IWT + +   W+  VL +     W VSWSL+GN+LAV+  +N V+LWKE + G W+ V  +E
Sbjct:  161 PAVAPGQVVSASGNQAGAARRFVTGGSDCQVKLWDFSAETGSWQSTQILTGHTDWVRDVAWSPTV-LSKSYIASASQDKTVRIWT-SSDLRDWKSTVL-NVDAVAWRVSWSLSGNVLAVSTGDNRVSLWKERLSGGWECVKTIE 301          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_CRYNE (Protein transport protein SEC13 OS=Cryptococcus neoformans GN=SEC13 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.159e-20
Identity = 55/135 (40.74%), Postives = 71/135 (52.59%), Query Frame = -1
Query:  317 LDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL---------KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVS 691
            L P ++  + G DN +++W       K      ++ H DWVR VAWAPN+GLP   IASASQD TV+I +       W    L           F   VW VSWSL GN+LAV+  +  V+LWKE V   W+ VS
Sbjct:  201 LAPQKRFVTAGSDNLIRIWGFDEEQKKWTEEETIKGHEDWVRDVAWAPNIGLPGMYIASASQDRTVLIHSRPSPSSSWTSAPLLPSLPQSQDPHFPDAVWRVSWSLAGNVLAVSCGDGKVSLWKEGVGKGWECVS 335          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SC131_CANGA (Protein transport protein SEC13-1 OS=Candida glabrata GN=SEC131 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19
Identity = 52/127 (40.94%), Postives = 74/127 (58.27%), Query Frame = -1
Query:  311 VQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL--KDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 682
            V++  + G DN VK+W+             L+ HSDWVR VAW+P++ L +S IAS SQD T  IWT       W    L  ++F   +W  SWSL+GN+LA++  +N VTLWKE ++G+W+    V
Sbjct:  171 VRRFVTGGADNLVKIWRYNPETQSYLVEDTLEGHSDWVRDVAWSPSV-LLRSYIASVSQDRTCNIWTQEDNTGPWVKTQLTPEEFPDVLWRASWSLSGNILAISGGDNKVTLWKENLNGKWESAGEV 296          
BLAST of CF835689 vs. ExPASy Swiss-Prot
Match: SEC13_PICGU (Protein transport protein SEC13 OS=Pichia guilliermondii GN=SEC13 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.539e-18
Identity = 54/137 (39.42%), Postives = 79/137 (57.66%), Query Frame = -1
Query:  308 WGLLD---PVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD--FKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 700
            W  +D   PV++  + G DN  KVW +            L+ H+DWVR V W+P+  L +S IA+ASQD TV+IW    EG+ W+ + L +  F    W  SWS +GN+LAV+  +N V+LWKE + G+W+    V+
Sbjct:  155 WAPVDTKSPVRRFVTGGSDNLAKVWSLDASKSTYVEEAKLEGHTDWVRDVCWSPS-ALVRSYIATASQDRTVLIWHQDGEGK-WQKQKLTEELFPDVCWRCSWSFSGNILAVSGGDNKVSLWKENLQGKWESAGEVD 289          
The following BLAST results are available for this feature:
BLAST of CF835689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
SEC13_ASHGO2.996e-2240.63Protein transport protein SEC13 OS=Ashbya gossypii... [more]
SEC13_CHAGB3.913e-2244.30Protein transport protein SEC13 OS=Chaetomium glob... [more]
SEC13_CANAL5.111e-2243.41Protein transport protein SEC13 OS=Candida albican... [more]
SEC13_COCIM2.536e-2140.28Protein transport protein SEC13 OS=Coccidioides im... [more]
SEC13_PICST3.313e-2142.97Protein transport protein SEC13 OS=Pichia stipitis... [more]
SEC13_DEBHA9.638e-2140.63Protein transport protein SEC13 OS=Debaryomyces ha... [more]
SEC13_PHANO1.644e-2041.67Protein transport protein SEC13 OS=Phaeosphaeria n... [more]
SEC13_CRYNE8.159e-2040.74Protein transport protein SEC13 OS=Cryptococcus ne... [more]
SC131_CANGA2.374e-1940.94Protein transport protein SEC13-1 OS=Candida glabr... [more]
SEC13_PICGU1.539e-1839.42Protein transport protein SEC13 OS=Pichia guillier... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01L11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835689 ID=CF835689; Name=CF835689; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTTTTTTTTTTTGCACAAATCCTTGAAATCACCTTTAAAGGCCAA
AGAGTTCATATGTAATTTAACAGAAACCTTGGCAGTCACAAATACAGACG
TATGGATGGAGATTAAGACACCATCATTTGTTTCTGAATCTGGCAAGAAA
GAATAACAACTAACCAAATACAAATTAAGTATTCAAACAAAATCAATCCA
ACCCAAAAAAAAACTAAACCAGGTGTAAGAAAGGCTACTTCCAATAAGTC
CAAAAGAGAACACAATGATTGTGAAAGGGTAAGTAGGAAGACACCTTATG
TCTGTGGCTCGACTACACTCACTTGTTGCCACTCACCATCAACAGCTTCC
TTCCACAATGTCACATTATTTGCATCAGCCACAGCCAACAAATTTCCAGT
CAGTGACCACGAAACACTCCAAACTGGTGTCTTAAAATCCTTCAAAACTC
GACCCTCCCATTGCTCCCCTTCCTTGGCACAGGTCCAAATAACAACTGTC
CCATCCTGTGATGCACTTGCAATTGTGGATTTTGGAAGACCCAAGTTGGG
TGCCCATGCCACGCTCCGCACCCAATCACTGTGCATCTGAAGGGCAGGGA
AGCAATCCATCTTCCAAATCCCATTATACATCTTCCACACCTTTACAGTA
TTATCACAACCACAAGAAGCCAATTTCTGAACAGGATCCAGTAAGCCCCA
TCCAACTAAAGCACCAGGAGCCATTGCCGG
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