CF835690

Overview
NameCF835690
Unique NameCF835690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3944 contig Csv1_Contig3944:39..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEC13_MAGGR (Protein transport protein SEC13 OS=Magnaporthe grisea GN=SEC13 PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = 3
Query:  219 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISV 578
            ++  HD  +D+YG+RLAT SSD +IKI  +     +   TLKGH G VW VAWAHPK+G+ILAS  YDG+V IW+E     W +   F  HK+SVN ++W+PHE G  LAC SSDG++SV
Sbjct:    6 KERAHDAVLDYYGRRLATCSSDRTIKIFEVEGETHRLTETLKGHEGAVWCVAWAHPKYGNILASSGYDGKVFIWRE-QGGAWQKIFDFALHKASVNIVSWSPHESGCLLACASSDGHVSV 124          
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.460e-27
Identity = 61/141 (43.26%), Postives = 86/141 (60.99%), Query Frame = 3
Query:  195 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE--GNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 587
            A+ I   H+D +HDV+ DF+G+R+AT SSD S+K+   S S   H  A+ K H G VW+V WAHP+FG +LASCS+D    +W+E  G  ND       W +  T  D ++SV  + +AP  +GL LA  S+DG + V+ A
Sbjct:    4 ARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVYEA 144          
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.907e-27
Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 3
Query:  195 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE--GNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 587
            A+ I   H+D +HDV+ DF+G+R+AT SSD S+K+   S S   H  A+ K H G VW+V WAHP+FG +LASCS+D    +W+E  G  ND       W +  T  D ++SV  + +AP  +GL LA  S+DG + ++ A
Sbjct:    4 ARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEA 144          
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 1.907e-27
Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 3
Query:  195 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE--GNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 587
            A+ I   H+D +HDV+ DF+G+R+AT SSD S+K+   S S   H  A+ K H G VW+V WAHP+FG +LASCS+D    +W+E  G  ND       W +  T  D ++SV  + +AP  +GL LA  S+DG + ++ A
Sbjct:    4 ARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEA 144          
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.907e-27
Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 3
Query:  195 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE--GNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 587
            A+ I   H+D +HDV+ DF+G+R+AT SSD S+K+   S S   H  A+ K H G VW+V WAHP+FG +LASCS+D    +W+E  G  ND       W +  T  D ++SV  + +AP  +GL LA  S+DG + ++ A
Sbjct:    4 ARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGEWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEA 144          
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.253e-27
Identity = 59/141 (41.84%), Postives = 87/141 (61.70%), Query Frame = 3
Query:  195 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE--GNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 587
            A+ I   H+D +HDV+ DF+G+R+AT SSD S+K+   S + + H  A+ K H G VW+V WAHP+FG +LASCS+D    +W+E  G  ND       W +  T  D ++SV  + +AP  +GL LA  S+DG + ++ A
Sbjct:    4 ARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENVNWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEA 144          
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.253e-27
Identity = 59/141 (41.84%), Postives = 87/141 (61.70%), Query Frame = 3
Query:  195 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE--GNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 587
            A+ I   H+D +HDV+ DF+G+R+AT SSD S+K+   S + + H  A+ K H G VW+V WAHP+FG +LASCS+D    +W+E  G  ND       W +  T  D ++SV  + +AP  +GL LA  S+DG + ++ A
Sbjct:    4 ARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENGNWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEA 144          
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.248e-27
Identity = 59/141 (41.84%), Postives = 86/141 (60.99%), Query Frame = 3
Query:  195 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE--GNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 587
            A+ I   H+D +HDV+ DF+G+R+AT SSD S+K+   S +   H  A+ K H G VW+V WAHP+FG +LASCS+D    +W+E  G  ND       W +  T  D ++SV  + +AP  +GL LA  S+DG + ++ A
Sbjct:    4 ARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEA 144          
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.135e-26
Identity = 57/141 (40.43%), Postives = 84/141 (59.57%), Query Frame = 3
Query:  195 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE--GNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 587
            A+ I   H+D +HDV+ DF+G+R+AT SSD S+K+    +    H  A+ K H G VW+V WAHP+FG +LASCS+D    +W+E  G  ND       W +  T  D ++SV  + +AP  +GL L   S+DG + ++ A
Sbjct:    4 AKSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKGDDGEWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEA 144          
BLAST of CF835690 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.046e-25
Identity = 57/141 (40.43%), Postives = 86/141 (60.99%), Query Frame = 3
Query:  195 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE--GNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 587
            A+ I   H+D +HDV+ DF+G+R+AT SSD S+K+   S++   +  A+ K H G VW+V WAHP+FG +LASCS+D    +W+E  G  ND       W +  T  D ++SV  + +AP  +GL L   S+DG + ++ A
Sbjct:    4 ARSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEA 144          
The following BLAST results are available for this feature:
BLAST of CF835690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
SEC13_MAGGR7.482e-3252.50Protein transport protein SEC13 OS=Magnaporthe gri... [more]
SEH1_MOUSE1.460e-2743.26Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=... [more]
SEH1_PONAB1.907e-2742.55Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=... [more]
SEH1_HUMAN1.907e-2742.55Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=... [more]
SEH1_BOVIN1.907e-2742.55Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1[more]
SEH1B_XENLA3.253e-2741.84Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE... [more]
SEH1A_XENLA3.253e-2741.84Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE... [more]
SEH1_XENTR4.248e-2741.84Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE... [more]
SEH1_DANRE6.135e-2640.43Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2[more]
SEH1_OSMMO1.046e-2540.43Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01L11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835690 ID=CF835690; Name=CF835690; organism=Citrus sinensis; type=EST; length=648bp
TTTTTAGTTCCGATACCACGCAAAAAGCCTAAAAACGTTTATTACTCTCA
GCCGGTGCTACTGGTCGGTCTTCGAATCCGCTCCTCTCTTAAGAAATTTG
GAGCTGAGAACATAAGATAAAAAGGAGCTACGAACTAGTGATCAAGGAGT
TGAAGTTTGAGGGGTAAAATAAAGAAATATAAAGTAAGATGCCTGCACAA
AAAATTGAAACTGGTCATGAAGACACTGTCCATGATGTAGCCATGGATTT
CTATGGAAAACGTTTAGCCACAGCTTCGTCTGACTCCAGCATTAAGATAA
TTGGTTTAAGCAACTCTGCTTCCCAGCACCTTGCTACATTGAAAGGCCAT
AGAGGTCCTGTTTGGCAAGTTGCATGGGCACACCCCAAGTTTGGGTCAAT
CCTTGCTTCCTGTTCCTATGATGGCCAAGTTATTATCTGGAAGGAAGGTA
ATCAAAATGATTGGACACAGGCTCATACTTTTAATGATCATAAATCATCT
GTCAACTCCATTGCGTGGGCACCTCATGAACTTGGTCTCTCCTTGGCTTG
TGGATCTTCTGATGGGAACATCTCAGTCTTTACTGCTACAGCTGATGGTG
GCTGGGATACTACCAGGATAGACCAGGCCCATCCAGTCGGAGTAACAT
back to top