CF835699

Overview
NameCF835699
Unique NameCF835699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5593 contig Csv1_Contig5593:32..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: RL37A_METM5 (50S ribosomal protein L37Ae OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.645e-13
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 2
Query:   65 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 316
            TKK G  G++G+RYG  +R +++ +E+ Q  +Y C  C    +KR    IW C+ CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGSRYGRKIRVRLRDVEIKQKKEYKCPVCAFPKLKRAGTSIWVCEKCGAKIAGGAYTPETGAGKVVTKAIRRVIE 90          
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: RL37A_METVS (50S ribosomal protein L37Ae OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 2
Query:   65 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 316
            TKK G  G++G RYG  +R +++ +E+ Q+ +Y C  C    +KR    IW C  CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGPRYGRKIRVRLRDVEIKQNKEYKCPVCAFPKLKRAGTSIWVCDKCGAKIAGGAYTPETGAGKVVTKAIRRVIE 90          
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: RL37A_METM7 (50S ribosomal protein L37Ae OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 2
Query:   65 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 316
            TKK G  G++G+RYG  +R +++ +E+ Q  +Y C  C    +KR    IW C  CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGSRYGRKIRVRLRDVEIKQKKEYKCPVCAFPKLKRVGTSIWVCDKCGAKIAGGAYTPETGAGKVVTKAIRRVIE 90          
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: RL37A_METM6 (50S ribosomal protein L37Ae OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 2
Query:   65 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 316
            TKK G  G++G+RYG  +R +++ +E+ Q  +Y C  C    +KR    IW C  CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGSRYGRKIRVRLRDVEIKQKKEYKCPVCAFPKLKRVGTSIWVCDKCGAKIAGGAYTPETGAGKVVTKAIRRVIE 90          
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: RL37A_THESM (50S ribosomal protein L37Ae OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 2
Query:   62 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAY 259
            RTKK G  G++G RYG  +R+++  +E     K+ C  CG+ AV+R + GIW C+ CG   AGGAY
Sbjct:    3 RTKKVGSAGRFGPRYGLKIRRRVAAVEEKMRQKHTCPVCGRKAVRRISTGIWQCQKCGATFAGGAY 68          
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: RL37A_ARCFU (50S ribosomal protein L37Ae OS=Archaeoglobus fulgidus GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.809e-12
Identity = 34/80 (42.50%), Postives = 44/80 (55.00%), Query Frame = 2
Query:   62 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTI 301
            RTKK    G++G RYG  +R+   ++E  Q  KY C+ CGK AVKR   GIW C+ CG   AGG Y   T     V  ++
Sbjct:    3 RTKKVRSAGRFGPRYGLRVRRTWLEIEAVQRQKYVCKKCGKKAVKRSGTGIWECRHCGYKFAGGCYQPVTPGGKIVEKSV 82          
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: RL37A_THEON (50S ribosomal protein L37Ae OS=Thermococcus onnurineus (strain NA1) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.363e-12
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 2
Query:   62 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAY 259
            RT K G  G++G RYG  +R+++  +E     K+ C  CG+ AV+R + GIW C+ CG   AGGAY
Sbjct:    3 RTTKVGSAGRFGPRYGLKIRRRVAAVEAKMKQKHICPVCGRKAVRRISTGIWQCQKCGATFAGGAY 68          
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: RL37A_THEGJ (50S ribosomal protein L37Ae OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.363e-12
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 2
Query:   62 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTI 301
            RT K G  G++G RYG  +R+++  +E     K+ C  CG+ AV+R + GIW C+ CG   AGGAY   T +    +  +
Sbjct:    3 RTVKVGSAGRFGPRYGLKIRRRVAAVEARMKQKHVCPVCGRKAVRRISTGIWQCQKCGATFAGGAYLPTTPAGKVAKRVV 82          
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: RL37A_PYRKO (50S ribosomal protein L37Ae OS=Pyrococcus kodakaraensis GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.363e-12
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 2
Query:   62 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNT-ASAVTVRST 298
            RT K G  G++G RYG  +R+++  +E     K+ C  CG+ AV+R + GIW C+ CG   AGGAY   T A  V  R T
Sbjct:    3 RTTKVGSAGRFGPRYGLKIRRRVAAVEARMKQKHVCPVCGRKAVRRISTGIWQCQKCGATFAGGAYLPTTPAGKVAKRVT 82          
BLAST of CF835699 vs. ExPASy Swiss-Prot
Match: RL37A_METST (50S ribosomal protein L37Ae OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.264e-12
Identity = 30/83 (36.14%), Postives = 44/83 (53.01%), Query Frame = 2
Query:   62 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRL 310
            +  K G  G++G RYG   ++ +K +E   H+K+ C  C +  VKR   GIW C+ CG V  GGAY   T      +  I+R+
Sbjct:    3 KKSKVGSTGRFGARYGRKAKRTVKDIEDKMHAKHVCPKCDRPGVKRTHAGIWKCRKCGAVFTGGAYIPTTPMGKVAKRNIKRI 85          
The following BLAST results are available for this feature:
BLAST of CF835699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RL37A_METM53.645e-1340.4850S ribosomal protein L37Ae OS=Methanococcus marip... [more]
RL37A_METVS6.218e-1340.4850S ribosomal protein L37Ae OS=Methanococcus vanni... [more]
RL37A_METM78.121e-1340.4850S ribosomal protein L37Ae OS=Methanococcus marip... [more]
RL37A_METM68.121e-1340.4850S ribosomal protein L37Ae OS=Methanococcus marip... [more]
RL37A_THESM1.061e-1245.4550S ribosomal protein L37Ae OS=Thermococcus sibiri... [more]
RL37A_ARCFU1.809e-1242.5050S ribosomal protein L37Ae OS=Archaeoglobus fulgi... [more]
RL37A_THEON2.363e-1243.9450S ribosomal protein L37Ae OS=Thermococcus onnuri... [more]
RL37A_THEGJ2.363e-1237.5050S ribosomal protein L37Ae OS=Thermococcus gammat... [more]
RL37A_PYRKO2.363e-1242.5050S ribosomal protein L37Ae OS=Pyrococcus kodakara... [more]
RL37A_METST5.264e-1236.1450S ribosomal protein L37Ae OS=Methanosphaera stad... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01L18_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835699 ID=CF835699; Name=CF835699; organism=Citrus sinensis; type=EST; length=580bp
CTCAACAGCCCCTTTTTGTTGAAGAGCTACAGACCTTCGCTCCAACGCCA
CACTGACCAAGCGTACGAAGAAGGCTGGAATCGTTGGAAAGTATGGTACC
CGTTATGGTGCCAGTTTGAGGAAGCAAATTAAGAAGATGGAGGTTAGTCA
GCATAGCAAATATTTCTGCGAATTTTGCGGGAAGTATGCGGTGAAGAGGA
AAGCTGTTGGCATTTGGGGCTGCAAGGACTGTGGGAAAGTCAAGGCAGGC
GGTGCCTACACTTTGAACACTGCTAGTGCTGTGACTGTGAGGAGCACAAT
CCGTAGGTTGAGGGAGCAAACTGAAAGCTGAGCTTGCCACCATTGGCTTA
CTCCCGTGTCTTAGGTCGTTTGATCTTTAGTTTCGGATACAACCTTAAAT
CATTTTTGATGTTGCTTTATTTCTAGATGCAAAACAATTGGTTGTTGGAA
CATGAAACTTTTGGCTGTGTTTTGACTCTTGAGATGTTCATTCGCTATTT
TTCCTATGAAATTATGTTATCTAGTGGGTTTTCCTATGAAATTATGTTAT
CTAGTGGGTTGATTAAAAAAAAAAAAAAAA
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