CF835709

Overview
NameCF835709
Unique NameCF835709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1124 contig Csv1_Contig1124:1..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: CGL_RAT (Cystathionine gamma-lyase OS=Rattus norvegicus GN=Cth PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.129e-27
Identity = 62/149 (41.61%), Postives = 96/149 (64.43%), Query Frame = -1
Query:  148 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 594
            +P   YL  RG+KTL +R+++     + +A+ LE++P+V++V YPGL SHP+H +A +Q TG  G+VSF + G L     F+  +K+  +A S GG ES+ + PAIM++  + + +R   GI D L+R S G+ED +DL  D+ QAL A
Sbjct:  247 SPFDCYLCCRGLKTLQIRMEKHFRNGMAVARFLESNPRVEKVIYPGLPSHPQHELAKRQCTGCPGMVSFYIKGTLQHAQVFLKNIKLFALAESLGGYESLAELPAIMTHASVPEKDRATLGISDTLIRLSVGLEDEKDLLEDLGQALKA 395          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: METB_HELPJ (Cystathionine gamma-synthase OS=Helicobacter pylori J99 GN=metB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.926e-27
Identity = 64/146 (43.84%), Postives = 95/146 (65.07%), Query Frame = -1
Query:  145 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 582
            ++L+ RG+KTL LR++     AL +A+ LE HPKV+RV+YPGL +HP H +A  QM GF G+ SF +  D  A + F+++LK+  +  S GG ES+V  PA+M++  + +++R   GI D LVR S G+E  +DL  D+ QA   I
Sbjct:  235 SWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNHELAKAQMRGFSGMFSFTLKNDSEA-VAFVESLKLFILGESLGGVESLVGIPALMTHACIPKAQREAAGIRDGLVRLSVGIEHEQDLLEDLDQAFAKI 379          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: CGL_MACFA (Cystathionine gamma-lyase OS=Macaca fascicularis GN=CTH PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.926e-27
Identity = 63/149 (42.28%), Postives = 98/149 (65.77%), Query Frame = -1
Query:  148 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 594
            +P   YL  RG+KTLH+R+++     + +A+ LE++P V++V YPGL SHP+H +A +Q TG  G+++F + G L     F+  LK+  +A S GG ES+V+ PAIM++  + +++R   GI D L+R S G+ED +DL  D+ QAL A
Sbjct:  248 SPLDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPGVEKVIYPGLPSHPQHELAKRQCTGCTGMITFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLVELPAIMTHASVPKNDRDVLGISDTLIRLSVGLEDEKDLLEDLDQALKA 396          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: CGL_BOVIN (Cystathionine gamma-lyase OS=Bos taurus GN=CTH PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.926e-27
Identity = 63/149 (42.28%), Postives = 97/149 (65.10%), Query Frame = -1
Query:  148 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 594
            +P   YL  RG+KTL +R+++     + +A+ LE++P+V++V YPGL SHP+H +A +Q TG  G+V+F + G L     F+  LK+  +A S GG ES+ + PAIM++  + +S+R   GI D L+R S G+ED +DL  D+ QAL A
Sbjct:  248 SPIDCYLCNRGLKTLQVRMEKHFENGMAVAQFLESNPQVEKVIYPGLPSHPQHELAKRQCTGCPGMVTFYIKGSLQHAETFLQNLKLFTLAESLGGYESLAELPAIMTHASVPKSDREVLGISDTLIRLSVGLEDKQDLLDDLDQALKA 396          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: MCCB_BACSU (Cystathionine gamma-lyase OS=Bacillus subtilis GN=mccB PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.285e-27
Identity = 63/151 (41.72%), Postives = 94/151 (62.25%), Query Frame = -1
Query:  145 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 597
            L P  ++L++RG+KTL LR++  +  A ++A  LE HP V+ ++YPG  +HP H +A  Q  GFGG++SF++ G       F+  LK+  IA S G  ES++  PA M++  + +  RL+ GI D L+R S G+ED EDL  D+ QAL  I
Sbjct:  230 LGPQDSWLLMRGIKTLGLRMEAIDQNARKIASFLENHPAVQTLYYPGSSNHPGHELAKTQGAGFGGMISFDI-GSEERVDAFLGNLKLFTIAESLGAVESLISVPARMTHASIPRERRLELGITDGLIRISVGIEDAEDLLEDIGQALENI 379          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: CGL_MOUSE (Cystathionine gamma-lyase OS=Mus musculus GN=Cth PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.318e-27
Identity = 61/149 (40.94%), Postives = 95/149 (63.76%), Query Frame = -1
Query:  148 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 594
            +P   YL  RG+KTL +R+++     + +A+ LE +P+V++V YPGL SHP+H +A +Q +G  G+VSF + G L     F+  LK+  +A S GG ES+ + PAIM++  + + +R   GI D L+R S G+ED +DL  D+ +AL A
Sbjct:  247 SPFDCYLCCRGLKTLQVRMEKHFKNGMAVARFLETNPRVEKVVYPGLPSHPQHELAKRQCSGCPGMVSFYIKGALQHAKAFLKNLKLFTLAESLGGYESLAELPAIMTHASVPEKDRATLGINDTLIRLSVGLEDEQDLLEDLDRALKA 395          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: CGL_HUMAN (Cystathionine gamma-lyase OS=Homo sapiens GN=CTH PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 7.318e-27
Identity = 63/149 (42.28%), Postives = 96/149 (64.43%), Query Frame = -1
Query:  148 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 594
            +P   YL  RG+KTLH+R+++     + +A+ LE++P V++V YPGL SHP+H +  +Q TG  G+V+F + G L     F+  LK+  +A S GG ES+ + PAIM++  + +++R   GI D L+R S G+ED EDL  D+ QAL A
Sbjct:  248 SPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKA 396          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: METC_LACLC (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.630e-26
Identity = 62/148 (41.89%), Postives = 96/148 (64.86%), Query Frame = -1
Query:  154 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 597
            L P  ++L+ RG+KTL  R++  ++ A ++A+ LEA   V +V+YPGL +H  H IA +QMT FGG++SFE+  D  A   F++ L+   +A S GG ES+++ PA+M++  + +  R + GI D L+R S GVE  EDL  D+ +AL
Sbjct:  231 LGPQDSWLVQRGIKTLAPRMEAHSANAQKIAEFLEASQAVSKVYYPGLVNHEGHEIAKKQMTAFGGMISFELT-DENAVKNFVENLRYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEALEDLLTDLKEAL 377          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: METC_BACSU (Cystathionine beta-lyase metC OS=Bacillus subtilis GN=metC PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.129e-26
Identity = 63/145 (43.45%), Postives = 90/145 (62.07%), Query Frame = -1
Query:  145 YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 579
            +L++RG+KTL +R+++ + TA R+A+  + HP VKRV+YPGL  HP       Q TG G V+SFE++    A  K ++ + +P  A S G  ESI+  PA MS+  + + ER K GI D L+R S GVE  +DL+ D  QAL  I
Sbjct:  241 WLVLRGLKTLQVRLEKASQTAQRLAEFFQKHPAVKRVYYPGLADHPGAETHKSQSTGAGAVLSFELESK-EAVKKLVENVSLPVFAVSLGAVESILSYPATMSHAAMPKEEREKRGITDGLLRLSVGVEHADDLEHDFEQALKEI 384          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: METB_MYCLE (Cystathionine gamma-synthase OS=Mycobacterium leprae GN=metB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.744e-26
Identity = 63/148 (42.57%), Postives = 90/148 (60.81%), Query Frame = -1
Query:  151 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 594
            +P  AYL +RG+KTL LR+Q+ N  A+ +A+ L  HP V  V YPGL SHP H +A +QM GFGG+VS  +     A        K+  +A S GG ES+++QP+ M++   + S+     + D+LVR S G+ED  DL  D+ QAL+
Sbjct:  244 SPFDAYLTMRGLKTLVLRMQRHNENAITVAEFLAGHPSVSAVLYPGLPSHPGHEVAARQMRGFGGMVSLRMRAGRLAAQDLCARTKVFTLAESLGGVESLIEQPSAMTHASTTGSQ---LEVPDDLVRLSVGIEDVGDLLCDLKQALN 388          
The following BLAST results are available for this feature:
BLAST of CF835709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CGL_RAT1.129e-2741.61Cystathionine gamma-lyase OS=Rattus norvegicus GN=... [more]
METB_HELPJ1.926e-2743.84Cystathionine gamma-synthase OS=Helicobacter pylor... [more]
CGL_MACFA1.926e-2742.28Cystathionine gamma-lyase OS=Macaca fascicularis G... [more]
CGL_BOVIN1.926e-2742.28Cystathionine gamma-lyase OS=Bos taurus GN=CTH PE=... [more]
MCCB_BACSU3.285e-2741.72Cystathionine gamma-lyase OS=Bacillus subtilis GN=... [more]
CGL_MOUSE7.318e-2740.94Cystathionine gamma-lyase OS=Mus musculus GN=Cth P... [more]
CGL_HUMAN7.318e-2742.28Cystathionine gamma-lyase OS=Homo sapiens GN=CTH P... [more]
METC_LACLC1.630e-2641.89Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METC_BACSU2.129e-2643.45Cystathionine beta-lyase metC OS=Bacillus subtilis... [more]
METB_MYCLE4.744e-2642.57Cystathionine gamma-synthase OS=Mycobacterium lepr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835709 ID=CF835709; Name=CF835709; organism=Citrus sinensis; type=EST; length=753bp
ACGATATGAAGTTTTAAGATTATTCAAGGATTATTGTCACTAAAACATAA
TAACAAAACGAACATATTCAAACATCAAAAGAGAATGCCGTTAGGAAAAG
TAAAATGAAAAATTTGCGAAGGTGAAACACAAAAAACACTTCTATATGGC
GTGCAGGGCCTGAAGTACATCAGCCTTCAAATCTTCAAAATCTTCCACTC
CAAAGCTAAAGCGAACCAAGTTATCCATAATCCCATACTTGAGCCTCTCC
GATTGGCTAAGGTCCCAATACGACATTATAGCTGGCTGATCAACAATGCT
CTCACAGCCACCGAAGGATGGAGCAATATATGGGATTTTCAAGGCATCAA
TAAATTTTATGGTGGCCGTTAGGTCTCCATCAACCTCAAAACTAACTACC
CCACCAAAACCAGTCATTTGCTGTGTGGCAATGTGATGCTCAGGATGACT
CTTCAAGCCTGGATAGTGAACGCGCTTCACCTTTGGATGTGCCTCTAAAA
TCTTGGCCATCCTCAACGCAGTTGAATTTTGTTGCTGTACACGAAGATGC
AATGTCTTCATGCCTCGAATGATCAAATACGCGGCATTCGGGTTGAGAGA
ATATAGACATGCTTCCCTCGATAGACTTGGCCTCCAAGTTCTTCAATTCT
CTTAGCATGCTTCAATTGCCTTTTGAAAATTTGTTCAAAGAGCAAACTCC
TAAGCCCTGCTGCATAATCTCTGACATGGGCCATCCTTTGGACGTCGATA
CTG
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