CF835709

Overview
NameCF835709
Unique NameCF835709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1124 contig Csv1_Contig1124:1..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: METB_MYCTU (Cystathionine gamma-synthase OS=Mycobacterium tuberculosis GN=metB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.799e-24
Identity = 61/146 (41.78%), Postives = 86/146 (58.90%), Query Frame = -1
Query:  154 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 591
            P  AYL +RG+KTL LR+Q+ +  A  +A+ L  HP V  V YPGL SHP H IA +QM GFGG+VS  +     A        ++  +A S GG ES+++ P+ M++   + S+     + D+LVR S G+ED  DL  D+ QAL
Sbjct:  245 PFDAYLTMRGLKTLVLRMQRHSENACAVAEFLADHPSVSSVLYPGLPSHPGHEIAARQMRGFGGMVSVRMRAGRRAAQDLCAKTRVFILAESLGGVESLIEHPSAMTHASTAGSQ---LEVPDDLVRLSVGIEDIADLLGDLEQAL 387          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: METB_MYCBO (Cystathionine gamma-synthase OS=Mycobacterium bovis GN=metB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.799e-24
Identity = 61/146 (41.78%), Postives = 86/146 (58.90%), Query Frame = -1
Query:  154 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 591
            P  AYL +RG+KTL LR+Q+ +  A  +A+ L  HP V  V YPGL SHP H IA +QM GFGG+VS  +     A        ++  +A S GG ES+++ P+ M++   + S+     + D+LVR S G+ED  DL  D+ QAL
Sbjct:  245 PFDAYLTMRGLKTLVLRMQRHSENACAVAEFLADHPSVSSVLYPGLPSHPGHEIAARQMRGFGGMVSVRMRAGRRAAQDLCAKTRVFILAESLGGVESLIEHPSAMTHASTAGSQ---LEVPDDLVRLSVGIEDIADLLGDLEQAL 387          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: CYS3_YEAST (Cystathionine gamma-lyase OS=Saccharomyces cerevisiae GN=CYS3 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.292e-23
Identity = 60/150 (40.00%), Postives = 94/150 (62.67%), Query Frame = -1
Query:  154 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPK-VKRVHYPGLKSHPEHHIATQQMTGF--GGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 594
            +P  A+L  RG+KTLHLRV+Q   +A ++A+ L A  + V  V+YPGLK+HP + +  +Q      GG++SF + G   A  KF  + ++  +A S GG ES+++ PA+M++  + +  R   G+ D+LVR S G+ED +DL  D+ QAL
Sbjct:  240 SPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQAL 389          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: METC_ARATH (Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.094e-22
Identity = 54/144 (37.50%), Postives = 85/144 (59.03%), Query Frame = -1
Query:  166 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 597
            L P   +L +RG+KT+ LR+++Q   A ++A  L +HP+VK+V+Y GL  HP HH+   Q  G G V SF + G +  +   ++  K   IA SFG  +S++  P  MS+  +    R   G+ ++LVR S G+ED +DL +D+
Sbjct:  313 LAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSF-ITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDL 455          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: METB_ECOLI (Cystathionine gamma-synthase OS=Escherichia coli (strain K12) GN=metB PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.156e-22
Identity = 53/145 (36.55%), Postives = 85/145 (58.62%), Query Frame = -1
Query:  148 AYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 582
            +YL++RG++TL  R++     A  + K L+  P VK++++P L  +  H IA +Q  GFG ++SFE+DGD     +F+  L +  +A S GG ES++   A M++  ++   R   GI + L+R S G+ED EDL AD+     A
Sbjct:  238 SYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRA 382          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: CYSD_SCHPO (O-acetylhomoserine (thiol)-lyase OS=Schizosaccharomyces pombe GN=SPBC428.11 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.156e-22
Identity = 53/148 (35.81%), Postives = 89/148 (60.14%), Query Frame = -1
Query:  154 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM-TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 594
            NP   +L+++G++TL LR+++    A  +AK LE HPKV  V YPGL+SH  H +A + +  G+G V+SF   G    + K ++ALK+     + G  +++V  PA  ++  L+  E++  G+  +L+R + G+E  +D+ AD  QAL
Sbjct:  279 NPFGVFLLLQGLETLSLRMERHVQNAFALAKYLEKHPKVNWVSYPGLESHVSHKLAKKYLKNGYGAVLSFGAKGGPDQSRKVVNALKLASQLANVGDAKTLVIAPAYTTHLQLTDEEQISAGVTKDLIRVAVGIEHIDDIIADFAQAL 426          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: METB_HAEIN (Cystathionine gamma-synthase OS=Haemophilus influenzae GN=metB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.978e-20
Identity = 56/147 (38.10%), Postives = 86/147 (58.50%), Query Frame = -1
Query:  157 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQA 597
            L+P  ++L IRGMKTL LR+++    A  +A+ L+A P+V+ V YP                  GG++SF +  +      F+ ++K+   A S GG ES +  PA  ++ D+ +SER+  GI + L+RFS G+ED ED+KAD+LQA
Sbjct:  235 LSPFDSWLTIRGMKTLSLRMKRHQENAQAIAEFLKAQPQVESVLYPNK----------------GGMLSFRLQDEAWVNT-FLKSIKLITFAESLGGTESFITYPATQTHMDIPESERVARGITNTLLRFSVGIEDVEDIKADLLQA 364          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: MET17_YEAST (Protein MET17 OS=Saccharomyces cerevisiae GN=MET17 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 4.300e-19
Identity = 54/162 (33.33%), Postives = 90/162 (55.56%), Query Frame = -1
Query:  145 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMT-GFGGVVSF----------EVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 597
            +NP A++L+++G++TL LR ++    AL++AK LE  P V  V YPGL SH  H  A + ++ GFGGV+SF          E D    +  + +D LK+     + G  +++V  P   ++  L+  E+L  G+  +L+R S G+E  +D+ AD  Q+   +
Sbjct:  277 MNPFASFLLLQGVETLSLRAERHGENALKLAKWLEQSPYVSWVSYPGLASHSHHENAKKYLSNGFGGVLSFGVKDLPNADKETDPFKLSGAQVVDNLKLASNLANVGDAKTLVIAPYFTTHKQLNDKEKLASGVTKDLIRVSVGIEFIDDIIADFQQSFETV 438          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: CYSA_STRCO (Putative cystathionine gamma-lyase OS=Streptomyces coelicolor GN=cysA PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.251e-18
Identity = 57/149 (38.26%), Postives = 85/149 (57.05%), Query Frame = -1
Query:  154 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG---IMDNLVRFSFGVEDFEDLKADVLQAL 591
            P  A+L  R + TL LRV +Q+STAL++A+ L   P++  + YPGL   P H +A+QQM  +G VVSF +     A  +F+DAL++   A SFGG  S  ++             R ++G   + +  +R S G ED +DL AD+L+AL
Sbjct:  253 PMEAWLAHRSIATLQLRVDRQDSTALKVAEALRTRPEITGLRYPGLPDDPSHKVASQQMLRYGCVVSFTLPSRARAD-RFLDALRLVEGATSFGGVRSTAER-------------RGRWGGDAVPEGFIRLSVGAEDPDDLVADLLRAL 387          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: MET17_KLULA (Protein MET17 OS=Kluyveromyces lactis GN=MET17 PE=3 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.383e-17
Identity = 53/154 (34.42%), Postives = 86/154 (55.84%), Query Frame = -1
Query:  169 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQM-TGFGGVVSF----------EVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKAD 597
            L+P A +L+++G++TL LR ++  S AL++A+ LE+ P V  V YPGL SH  H  A + +  GFGGV+SF          E D    +  + +D LK+     + G  +++V  P   ++  L+  E+L  G+  +L+R S G E  +D+ AD
Sbjct:  276 LSPFAGFLLLQGLETLSLRGERHGSNALKLAQYLESSPYVSWVSYPGLPSHSHHENAKKYLENGFGGVLSFGVKDLPNASEESDPFKASGAQVVDNLKLASNLANVGDSKTLVIAPYFTTHQQLTDEEKLASGVTKDLIRVSVGTEFIDDIIAD 429          
The following BLAST results are available for this feature:
BLAST of CF835709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
METB_MYCTU5.799e-2441.78Cystathionine gamma-synthase OS=Mycobacterium tube... [more]
METB_MYCBO5.799e-2441.78Cystathionine gamma-synthase OS=Mycobacterium bovi... [more]
CYS3_YEAST1.292e-2340.00Cystathionine gamma-lyase OS=Saccharomyces cerevis... [more]
METC_ARATH1.094e-2237.50Cystathionine beta-lyase, chloroplastic OS=Arabido... [more]
METB_ECOLI4.156e-2236.55Cystathionine gamma-synthase OS=Escherichia coli (... [more]
CYSD_SCHPO4.156e-2235.81O-acetylhomoserine (thiol)-lyase OS=Schizosaccharo... [more]
METB_HAEIN2.978e-2038.10Cystathionine gamma-synthase OS=Haemophilus influe... [more]
MET17_YEAST4.300e-1933.33Protein MET17 OS=Saccharomyces cerevisiae GN=MET17... [more]
CYSA_STRCO1.251e-1838.26Putative cystathionine gamma-lyase OS=Streptomyces... [more]
MET17_KLULA1.383e-1734.42Protein MET17 OS=Kluyveromyces lactis GN=MET17 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01M01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835709 ID=CF835709; Name=CF835709; organism=Citrus sinensis; type=EST; length=753bp
ACGATATGAAGTTTTAAGATTATTCAAGGATTATTGTCACTAAAACATAA
TAACAAAACGAACATATTCAAACATCAAAAGAGAATGCCGTTAGGAAAAG
TAAAATGAAAAATTTGCGAAGGTGAAACACAAAAAACACTTCTATATGGC
GTGCAGGGCCTGAAGTACATCAGCCTTCAAATCTTCAAAATCTTCCACTC
CAAAGCTAAAGCGAACCAAGTTATCCATAATCCCATACTTGAGCCTCTCC
GATTGGCTAAGGTCCCAATACGACATTATAGCTGGCTGATCAACAATGCT
CTCACAGCCACCGAAGGATGGAGCAATATATGGGATTTTCAAGGCATCAA
TAAATTTTATGGTGGCCGTTAGGTCTCCATCAACCTCAAAACTAACTACC
CCACCAAAACCAGTCATTTGCTGTGTGGCAATGTGATGCTCAGGATGACT
CTTCAAGCCTGGATAGTGAACGCGCTTCACCTTTGGATGTGCCTCTAAAA
TCTTGGCCATCCTCAACGCAGTTGAATTTTGTTGCTGTACACGAAGATGC
AATGTCTTCATGCCTCGAATGATCAAATACGCGGCATTCGGGTTGAGAGA
ATATAGACATGCTTCCCTCGATAGACTTGGCCTCCAAGTTCTTCAATTCT
CTTAGCATGCTTCAATTGCCTTTTGAAAATTTGTTCAAAGAGCAAACTCC
TAAGCCCTGCTGCATAATCTCTGACATGGGCCATCCTTTGGACGTCGATA
CTG
back to top