CF835710

Overview
NameCF835710
Unique NameCF835710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: Y1105_ARATH (Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.455e-13
Identity = 32/89 (35.96%), Postives = 52/89 (58.43%), Query Frame = 2
Query:   98 QVEVLSQIRHPHVVLLLGACPEIN-------CLVYEYLENGSLEDYIYHQNGKPALP--WFVRFQIIFEVACGLAFLHNSKPKPIVHRD 337
            +VE++S ++H ++V L G C  ++        LVY+Y+ NG+L+D+++ +     +P  W  R  II +VA GLA+LH      I HRD
Sbjct:  339 EVEIISNLKHRNLVPLRG-CSMVDDDSESQRYLVYDYMSNGNLDDHLFPRGETTKMPLSWPQRKSIILDVAKGLAYLHYGVKPAIYHRD 426          

HSP 2 Score: 41.2022 bits (95), Expect = 1.455e-13
Identity = 18/37 (48.65%), Postives = 27/37 (72.97%), Query Frame = 3
Query:  363 TILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLL 473
            T +AGT  Y+ PEY   G +  KSD+Y+FGV+IL+++
Sbjct:  460 TRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVILEIM 496          
BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: Y5597_ARATH (Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.571e-13
Identity = 46/120 (38.33%), Postives = 67/120 (55.83%), Query Frame = 2
Query:   98 QVEVLSQIRHPHVVLLLGACPEIN--CLVYEYLENGSLEDYIYHQNGKPALPWFVRFQIIFEVACGLAFLHNSKPKPIVHRD*QHHRVQRDHSCWYS------SLHGPRISQNRHYSSQI 433
            ++E+LSQ RH H+V L+G C E N   LVYEY+ENG+L+ ++Y  +G  +L W  R +I    A GL +LH    KP++HRD +   +  D +          S  GP I Q  H S+ +
Sbjct:  526 EIEMLSQFRHRHLVSLIGYCDENNEMILVYEYMENGTLKSHLY-GSGLLSLSWKQRLEICIGSARGLHYLHTGDAKPVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQT-HVSTAV 643          
BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: PUB50_ARATH (Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.880e-13
Identity = 35/83 (42.17%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   98 QVEVLSQIRHPHVVLLLGACPEI-NCLVYEYLENGSLEDYIYHQNGKPA----LPWFVRFQIIFEVACGLAFLHNSKPKPIVH 331
            +V++L++IRHP++V + G C +   CL++EY+ NG+L D ++    K      L W  R +I  +V  GL FLH+ KPKPIVH
Sbjct:  463 KVKLLNEIRHPNLVAIAGFCSQRPKCLLFEYMHNGNLRDNLFTSQRKSRRSKILKWHDRIRIAHQVCSGLGFLHSVKPKPIVH 545          

HSP 2 Score: 25.0238 bits (53), Expect = 1.880e-13
Identity = 12/24 (50.00%), Postives = 17/24 (70.83%), Query Frame = 3
Query:  429 KSDLYAFGVIILQLLTSCLPNGVL 500
            K D+ AFGV++L LLT    +G+L
Sbjct:  578 KPDVMAFGVLLLHLLTGRNWHGLL 601          
BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: CRK20_ARATH (Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana GN=CRK20 PE=2 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 1.887e-13
Identity = 29/82 (35.37%), Postives = 50/82 (60.98%), Query Frame = 2
Query:   98 QVEVLSQIRHPHVVLLLGAC--PEINCLVYEYLENGSLEDYIYHQNGKPALPWFVRFQIIFEVACGLAFLHNSKPKPIVHRD 337
            +V V+++++H ++V LLG C   E   LVYE++ N SL+ +++    +  L W  R++II  +A G+ +LH      I+HRD
Sbjct:  388 EVVVVAKLQHRNLVKLLGYCLEGEEKILVYEFVPNKSLDYFLFDPTMQGQLDWSRRYKIIGGIARGILYLHQDSRLTIIHRD 469          

HSP 2 Score: 40.4318 bits (93), Expect = 1.887e-13
Identity = 18/43 (41.86%), Postives = 27/43 (62.79%), Query Frame = 3
Query:  348 TEYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLT 476
            TE     + GT  YM PEY   G    KSD+Y+FGV++L++++
Sbjct:  499 TEANTRRVVGTYGYMAPEYAMYGKFSMKSDVYSFGVLVLEIVS 541          
BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: IRAK1_HUMAN (Interleukin-1 receptor-associated kinase 1 OS=Homo sapiens GN=IRAK1 PE=1 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 2.446e-13
Identity = 36/92 (39.13%), Postives = 49/92 (53.26%), Query Frame = 2
Query:   98 QVEVLSQIRHPHVVLLLGACPE--INCLVYEYLENGSLEDYIYHQ-NGKPALPWFVRFQIIFEVACGLAFLHNSKPKPIVHRD*QHHRVQRD 364
            +VE LS+ RHP++V   G C +    CLVY +L NGSLED ++ Q    P L W  R  I+   A  + FLH   P  ++H D +   V  D
Sbjct:  259 EVEQLSRFRHPNIVDFAGYCAQNGFYCLVYGFLPNGSLEDRLHCQTQACPPLSWPQRLDILLGTARAIQFLHQDSPS-LIHGDIKSSNVLLD 349          

HSP 2 Score: 36.1946 bits (82), Expect = 2.446e-13
Identity = 15/39 (38.46%), Postives = 25/39 (64.10%), Query Frame = 3
Query:  357 RETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLL 473
            R   + GTL Y+  EY +TG +   +D ++FGV++L+ L
Sbjct:  380 RTQTVRGTLAYLPEEYIKTGRLAVDTDTFSFGVVVLETL 418          
BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.455e-13
Identity = 34/94 (36.17%), Postives = 48/94 (51.06%), Query Frame = 2
Query:   98 QVEVLSQIRHPHVVLLLGAC--PEINCLVYEYLENGSLEDYIYHQNG-KPALPWFVRFQIIFEVACGLAFLHNSKPKPIVHRD*QHHRVQRDHS 370
            +VE++    H +++ L G C  PE   LVY Y+ NGS+ D +    G KP+L W  R  I    A GL +LH      I+HRD +   +  D S
Sbjct:  344 EVEMIGLAVHRNLLRLFGFCMTPEERMLVYPYMPNGSVADRLRDNYGEKPSLDWNRRISIALGAARGLVYLHEQCNPKIIHRDVKAANILLDES 437          

HSP 2 Score: 40.0466 bits (92), Expect = 2.455e-13
Identity = 17/38 (44.74%), Postives = 27/38 (71.05%), Query Frame = 3
Query:  363 TILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLT 476
            T + GT+ ++ PEY  TG    K+D++ FGV+IL+L+T
Sbjct:  460 TAVRGTIGHIAPEYLSTGQSSEKTDVFGFGVLILELIT 497          
BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 3.154e-13
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 2
Query:   98 QVEVLSQIRHPHVVLLLGACPEIN--CLVYEYLENGSLEDYIYH-QNGKPALPWFVRFQIIFEVACGLAFLHNSKPKPIVHRD 337
            ++ ++S + HP++V L G C E     LVYE++EN SL   ++  Q  +  L W  R +I   VA GLA+LH      IVHRD
Sbjct:  668 EIGMISALHHPNLVKLYGCCVEGGQLLLVYEFVENNSLARALFGPQETQLRLDWPTRRKICIGVARGLAYLHEESRLKIVHRD 750          

HSP 2 Score: 40.4318 bits (93), Expect = 3.154e-13
Identity = 16/37 (43.24%), Postives = 26/37 (70.27%), Query Frame = 3
Query:  363 TILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLL 473
            T +AGT  YM PEY   G +  K+D+Y+FG++ L+++
Sbjct:  784 TRIAGTFGYMAPEYAMRGHLTDKADVYSFGIVALEIV 820          
BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: Y1570_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g05700 OS=Arabidopsis thaliana GN=At1g05700 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 5.334e-13
Identity = 30/82 (36.59%), Postives = 48/82 (58.54%), Query Frame = 2
Query:   98 QVEVLSQIRHPHVVLLLGACPEINC--LVYEYLENGSLEDYIYHQNGKPALPWFVRFQIIFEVACGLAFLHNSKPKPIVHRD 337
            +VEVL ++ H ++  L+G   E +   L+YE++ NG++ D++  +  +  L W  R QI  + A GL +LH     PIVHRD
Sbjct:  613 EVEVLVRVHHVNLTALIGYFHEGDQMGLIYEFMANGNMADHLAGKY-QHTLSWRQRLQIALDAAQGLEYLHCGCKPPIVHRD 693          

HSP 2 Score: 42.743 bits (99), Expect = 5.334e-13
Identity = 17/38 (44.74%), Postives = 28/38 (73.68%), Query Frame = 3
Query:  363 TILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLT 476
            T++AGT  Y+DP    T  +  KSD+Y+FGV++L+++T
Sbjct:  728 TLVAGTPGYLDPLCFETNGLNEKSDIYSFGVVLLEMIT 765          
BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: IRAK4_MOUSE (Interleukin-1 receptor-associated kinase 4 OS=Mus musculus GN=Irak4 PE=1 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 5.421e-13
Identity = 29/82 (35.37%), Postives = 47/82 (57.32%), Query Frame = 2
Query:   98 QVEVLSQIRHPHVVLLLGACPEIN--CLVYEYLENGSLEDYIYHQNGKPALPWFVRFQIIFEVACGLAFLHNSKPKPIVHRD 337
            +++V++  +H ++V LLG   + +  CLVY Y+ NGSL D +   +G P L W  R ++    A G+ FLH +     +HRD
Sbjct:  233 EIKVMATCQHENLVELLGFSSDSDNLCLVYAYMPNGSLLDRLSCLDGTPPLSWHTRCKVAQGTANGIRFLHENHH---IHRD 311          

HSP 2 Score: 42.3578 bits (98), Expect = 5.421e-13
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 3
Query:  369 LAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLT 476
            + GT  YM PE  R G I PKSD+Y+FGV++L+L+T
Sbjct:  348 IVGTTAYMAPEALR-GEITPKSDIYSFGVVLLELIT 382          
BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: RPK2_ARATH (LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 6.876e-13
Identity = 30/94 (31.91%), Postives = 52/94 (55.32%), Query Frame = 2
Query:   98 QVEVLSQIRHPHVVLLLG--ACPEINCLVYEYLENGSLEDYIYHQNGKPALPWFVRFQIIFEVACGLAFLHNSKPKPIVHRD*QHHRVQRDHSC 373
            +++ L ++RHP++V L+G  A      LVY YL  G+LE +I  ++ +    W V  +I  ++A  LA+LH+     ++HRD +   +  D  C
Sbjct:  918 EIKTLGRLRHPNLVTLIGYHASETEMFLVYNYLPGGNLEKFIQERSTRD---WRVLHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDC 1008          

HSP 2 Score: 40.4318 bits (93), Expect = 6.876e-13
Identity = 17/38 (44.74%), Postives = 28/38 (73.68%), Query Frame = 3
Query:  363 TILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLT 476
            T +AGT  Y+ PEY  T  +  K+D+Y++GV++L+LL+
Sbjct: 1030 TGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLS 1067          
The following BLAST results are available for this feature:
BLAST of CF835710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
Y1105_ARATH1.455e-1335.96Probable receptor-like protein kinase At1g11050 OS... [more]
Y5597_ARATH1.571e-1338.33Probable receptor-like protein kinase At5g59700 OS... [more]
PUB50_ARATH1.880e-1342.17Putative U-box domain-containing protein 50 OS=Ara... [more]
CRK20_ARATH1.887e-1335.37Putative cysteine-rich receptor-like protein kinas... [more]
IRAK1_HUMAN2.446e-1339.13Interleukin-1 receptor-associated kinase 1 OS=Homo... [more]
Y5457_ARATH2.455e-1336.17Probable LRR receptor-like serine/threonine-protei... [more]
Y1534_ARATH3.154e-1339.76Probable LRR receptor-like serine/threonine-protei... [more]
Y1570_ARATH5.334e-1336.59Probable LRR receptor-like serine/threonine-protei... [more]
IRAK4_MOUSE5.421e-1335.37Interleukin-1 receptor-associated kinase 4 OS=Mus ... [more]
RPK2_ARATH6.876e-1331.91LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M02_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835710 ID=CF835710; Name=CF835710; organism=Citrus sinensis; type=EST; length=751bp
TTTTTTTTTTTTTTTTTAAAAAAAAATGAGGTGCCTTATAATTTGTGAAT
CCCAAGTTCATAGATATGATCTGCCTTAAAAATTTCCTTCCAATTTGCAG
GTTGAAGTTTTAAGCCAGATACGACATCCACACGTGGTTCTGCTGCTTGG
AGCCTGTCCTGAGATCAATTGTTTGGTCTATGAATACCTGGAAAATGGAA
GCCTGGAGGACTATATTTACCATCAGAATGGGAAGCCTGCTCTTCCTTGG
TTTGTTCGGTTCCAGATAATTTTTGAAGTAGCCTGTGGACTTGCATTCTT
ACACAACTCAAAGCCAAAGCCTATTGTGCATCGAGACTGACAACATCACA
GAGTACAGAGAGACCATTCTTGCTGGTACTCTTCATTACATGGACCCAGA
ATATCACAGAACCGGCACTATTCGTCCCAAATCTGATCTATATGCATTTG
GAGTTATTATACTCCAGTTATTGACATCTTGCCTTCCGAATGGAGTTCTA
CTGATCTTGATACCGAAGTCATGCCGGTTCTCAGGAAACTCAAGGATGTT
GCAGATGCTTGTGTAAAGTTGGAAAGCAGCAATGTTTATGCACCAAGCCA
CTTCTTCTGTCCAATCATTGCTGCTGATGGATTTACTTATGAGCATAGAG
CAATCAAGGCATGGCTTGAGAAACACAATGTATCTCCAGTGACAAAGCTT
AGGCTCCAGCATTTGTCAATTATTCCAAACTACACACTGCGTTCTGCCAT
T
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