CF835714

Overview
NameCF835714
Unique NameCF835714
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835714_ssr679 microsatellite CF835714_ssr679:679..688. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10229 contig Csv1_Contig10229:287..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835714 vs. ExPASy Swiss-Prot
Match: PSBP3_TOBAC (Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana tabacum GN=PSBP3 PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 7.503e-78
Identity = 139/182 (76.37%), Postives = 159/182 (87.36%), Query Frame = -2
Query:  256 SANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 789
            +ANVFGKPKT+TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD  SNV V ITPTDKKSITD+GSPE+FLS+VDYLLG+QAYSGKT SEGGF+ DAVA AN+LE S        YY+LS+LTRTADG+EGGKHQL+TATV  GKLYICKAQAGDKRWFKG +K+VE+TA+SFS+A
Sbjct:   85 AANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 266          
BLAST of CF835714 vs. ExPASy Swiss-Prot
Match: PSBP_BRAJU (Oxygen-evolving enhancer protein 2, chloroplastic (Fragment) OS=Brassica juncea GN=PSBP PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 9.799e-78
Identity = 138/182 (75.82%), Postives = 160/182 (87.91%), Query Frame = -2
Query:  256 SANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 789
            +ANVFGKPKTNTDF   NGDGF++ +P+KWNPS+E E+PGQVLRYEDNFD  SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+ EGGFD +AVATANILE +++     PYY+LSVLTRTAD DEGGKHQLITATV GGKLYICKAQAGDKRWFKG  K+VE  A+SFSVA
Sbjct:   36 AANVFGKPKTNTDFTAINGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETACEGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADEDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 217          
BLAST of CF835714 vs. ExPASy Swiss-Prot
Match: PSBP_NARPS (Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 7.022e-76
Identity = 141/182 (77.47%), Postives = 151/182 (82.97%), Query Frame = -2
Query:  256 SANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 789
            SANVFGKPKTNTDF    GDGFK+ IPSKWNPSKE EFPGQVLRYEDNFD  SNV V++ PTDKKSI DYGSPE+FLS+VDYLLGKQAY GKT SEGGF+P+AV TANILE S        YY + VLTRTADGDEGGKH LITATV  GKLYICKAQAGDKRWFKG +K+VES ASSFS A
Sbjct:   84 SANVFGKPKTNTDFQTVTGDGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQFLSQVDYLLGKQAYFGKTISEGGFEPNAVRTANILETSTPVVGGKDYYSIHVLTRTADGDEGGKHLLITATVSDGKLYICKAQAGDKRWFKGAKKFVESAASSFSAA 265          
BLAST of CF835714 vs. ExPASy Swiss-Prot
Match: PSBP_WHEAT (Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum aestivum GN=PSBP PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.240e-72
Identity = 134/182 (73.63%), Postives = 154/182 (84.62%), Query Frame = -2
Query:  256 SANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 789
            +ANVFGK K NTDF+ Y+G+GFKL IP+KWNPSKEREFPGQVLRYEDNFD  SN+SVII PT KK+ITDYGSPEEFLS+V +LLG+Q+Y GKT SEGGF+ DAVATAN+LE+S        YY ++VLTRTADGDEGGKHQLITATV  GKLY+CKAQ  DKRWFKG +K+VE+ A SFSVA
Sbjct:   78 AANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVLRYEDNFDATSNLSVIINPTTKKTITDYGSPEEFLSQVGFLLGQQSYGGKTDSEGGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQR-DKRWFKGAKKFVENAAGSFSVA 258          
BLAST of CF835714 vs. ExPASy Swiss-Prot
Match: PSBP_CHLRE (Oxygen-evolving enhancer protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBP PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.198e-53
Identity = 105/183 (57.38%), Postives = 128/183 (69.95%), Query Frame = -2
Query:  259 SANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR-----PPYYFLSVLTRTADGDEGGKHQLITATV-KGGKLYICKAQAGDKRWFKGTRKYVESTASSFSV 789
            SANVFGK    + F+PY GDGF L +P+KWNPSKE +FPG +LRYEDNFD  +N+ VI   TDKK+I D+GS ++FL  V YLLGKQAYSG+T SEGGF P+ V+ A++L+ S         YY   +L R+ADGDEGG+HQLI ATV    KLYI K Q GDKRWFKG +K       SF+V
Sbjct:   62 SANVFGKVTNKSGFVPYAGDGFALLLPAKWNPSKENDFPGVILRYEDNFDAVNNLVVIAQDTDKKAIADFGSQDKFLESVSYLLGKQAYSGETQSEGGFAPNRVSAASLLDVSTTTDKKGKTYYKYELLVRSADGDEGGRHQLIGATVGSDNKLYIIKIQIGDKRWFKGAKKEAMGAFDSFTV 244          
BLAST of CF835714 vs. ExPASy Swiss-Prot
Match: PSBP2_ARATH (Putative oxygen-evolving enhancer protein 2-2 OS=Arabidopsis thaliana GN=PSBP2 PE=5 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 3.509e-51
Identity = 100/125 (80.00%), Postives = 112/125 (89.60%), Query Frame = -2
Query:  256 IITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRP----PYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 618
            +ITPTDKKSITDYGSPE+FLS+V+YLLGKQAY G+T+SEGGFD +AVATANILE S +      YY+LSVLTRTADGDEGGKHQLITATV GGKLYICKAQAGDKRWFKG RK+VE+ A+SFSVA
Sbjct:    1 MITPTDKKSITDYGSPEQFLSQVNYLLGKQAYVGETASEGGFDANAVATANILETSTQEIGGKEYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 125          
The following BLAST results are available for this feature:
BLAST of CF835714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSBP3_TOBAC7.503e-7876.37Oxygen-evolving enhancer protein 2-3, chloroplasti... [more]
PSBP_BRAJU9.799e-7875.82Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_NARPS7.022e-7677.47Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_WHEAT1.240e-7273.63Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_CHLRE2.198e-5357.38Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP2_ARATH3.509e-5180.00Putative oxygen-evolving enhancer protein 2-2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M04_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835714 ID=CF835714; Name=CF835714; organism=Citrus sinensis; type=EST; length=790bp
TTTTTTTTTTTTTTGTGGCTGGAACTGCAGGGGACAATTTACTCTTTAAC
ACACAGAATGTGACGGGAAACATTTGTAACAGCTATACAAGAGGGTCCTT
ATATGCCATTAAATACTCAAATATCCACAAGCTTTTTCCAACCAACTCCT
TCAATTAGAAACTCAGAAGCTTTTGGGGAAAGATGGGAGTAGATAATTCA
AAACAAACAGCATACATTAAGTTGGATTTACATAAAAATTCTGATTAATG
TCTCAAGCAACACTGAAAGAACTGGCAGTGCTTTCCACATACTTTCTTGT
TCCCTTAAACCACCTCTTGTCTCCAGCTTGCGCCTTGCAGATGTAAAGCT
TGCCACCTTTAACCGTGGCTGTAATTAGTTGATGCTTGCCACCTTCATCT
CCATCAGCAGTTCTTGTTAATACAGACAAGAAGTAGTATGGTGGTCGGAC
TGAAGCCTCCAAGATGTTAGCTGTTGCCACAGCATCAGGGTCGAAACCAC
CCTCAGACGAAGTTTTGCCGGAATAGGCTTGTTTTCCCAGCAAGTAGTCC
ACCTTACTGAGGAATTCCTCGGGGGAACCGTAGTCAGTGATGGATTTCTT
GTCAGTTGGGGTGATTATGACGGAGACATTGCTGTTGGGATCAAAGTTGT
CTTCGTATCTAAGAACCTGACCAGGGAACTCTCTCTCTTTGCTGGGGTTC
CATTTTGAGGGAATCGACAGCTTGAATCCATCTCCATTGTATGGCAAGAA
GTCAGTGTTGGTCTTTGGCTTACCAAACACATTGGCAGAT
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