CF835715

Overview
NameCF835715
Unique NameCF835715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835715_ssr362 microsatellite CF835715_ssr362:362..371. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10229 contig Csv1_Contig10229:28..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835715 vs. ExPASy Swiss-Prot
Match: PSBP_SINAL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2)

HSP 1 Score: 319.316 bits (817), Expect = 1.192e-86
Identity = 163/230 (70.87%), Postives = 196/230 (85.22%), Query Frame = 3
Query:   21 MASTQCFLHHHALSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATV 689
            MA + CFLH  AL+++ AR+S   SSQR+VS  K   +VC+AQ+    E+D S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPK NTDF  Y+GDGF++ +P+KWNPS+E E+PGQVLRYEDNFD  SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+SEGGFD +AVATANILE +++     PYY+LSVLTRTADGDEGGKHQLITATV
Sbjct:    1 MAYSACFLHQSALASSTARSSPSSSSQRYVSISK---LVCKAQQ--THEEDNSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKKNTDFTAYSGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADGDEGGKHQLITATV 225          
BLAST of CF835715 vs. ExPASy Swiss-Prot
Match: PSBP_NARPS (Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.541e-78
Identity = 155/237 (65.40%), Postives = 175/237 (73.84%), Query Frame = 3
Query:   21 MASTQCFLHHHA-------LSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATV 689
            MAST CFLHHHA       LS T + T+     Q H + ++  +  C  +  A+       +SRRLALT+LIG AA+GS+VS ADAAYGESANVFGKPKTNTDF    GDGFK+ IPSKWNPSKE EFPGQVLRYEDNFD  SNV V++ PTDKKSI DYGSPE+FLS+VDYLLGKQAY GKT SEGGF+P+AV TANILE S        YY + VLTRTADGDEGGKH LITATV
Sbjct:    1 MASTACFLHHHAPSPATSNLSRTRSATNRDEQQQEHSARLQSPEADCATENDAL-------LSRRLALTILIGGAALGSRVSAADAAYGESANVFGKPKTNTDFQTVTGDGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQFLSQVDYLLGKQAYFGKTISEGGFEPNAVRTANILETSTPVVGGKDYYSIHVLTRTADGDEGGKHLLITATV 230          
BLAST of CF835715 vs. ExPASy Swiss-Prot
Match: PSBP_BRAJU (Oxygen-evolving enhancer protein 2, chloroplastic (Fragment) OS=Brassica juncea GN=PSBP PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.725e-77
Identity = 141/182 (77.47%), Postives = 163/182 (89.56%), Query Frame = 3
Query:  156 EDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATV 689
            EDD S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDF   NGDGF++ +P+KWNPS+E E+PGQVLRYEDNFD  SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+ EGGFD +AVATANILE +++     PYY+LSVLTRTAD DEGGKHQLITATV
Sbjct:    1 EDDTSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFTAINGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETACEGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADEDEGGKHQLITATV 182          
BLAST of CF835715 vs. ExPASy Swiss-Prot
Match: PSBP_WHEAT (Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum aestivum GN=PSBP PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.461e-76
Identity = 151/229 (65.94%), Postives = 177/229 (77.29%), Query Frame = 3
Query:   21 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQAVQEDDGSAV-SRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATV 689
            MAST CFLH      + AR ++S R    +  TQ+ VC+AQK      D + V SRR AL++L GAAA+  KVSPA AAYGE+ANVFGK K NTDF+ Y+G+GFKL IP+KWNPSKEREFPGQVLRYEDNFD  SN+SVII PT KK+ITDYGSPEEFLS+V +LLG+Q+Y GKT SEGGF+ DAVATAN+LE+S        YY ++VLTRTADGDEGGKHQLITATV
Sbjct:    1 MASTSCFLHQ-----STARLAASARPAPAVGRTQLFVCKAQKNDEAASDAAVVTSRRAALSLLAGAAAIAVKVSPAAAAYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVLRYEDNFDATSNLSVIINPTTKKTITDYGSPEEFLSQVGFLLGQQSYGGKTDSEGGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATV 224          
BLAST of CF835715 vs. ExPASy Swiss-Prot
Match: PSBP_CHLRE (Oxygen-evolving enhancer protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBP PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.871e-53
Identity = 117/228 (51.32%), Postives = 148/228 (64.91%), Query Frame = 3
Query:   21 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR-----PPYYFLSVLTRTADGDEGGKHQLITATV 689
            MA+  C   + A +  P    +S+R       + +V RA         GS VSRR AL    GAAA+ S  SPA+AAYG+SANVFGK    + F+PY GDGF L +P+KWNPSKE +FPG +LRYEDNFD  +N+ VI   TDKK+I D+GS ++FL  V YLLGKQAYSG+T SEGGF P+ V+ A++L+ S         YY   +L R+ADGDEGG+HQLI ATV
Sbjct:    1 MATALC---NKAFAAAPVARPASRR-------SAVVVRAS--------GSDVSRRAALAGFAGAAALVSS-SPANAAYGDSANVFGKVTNKSGFVPYAGDGFALLLPAKWNPSKENDFPGVILRYEDNFDAVNNLVVIAQDTDKKAIADFGSQDKFLESVSYLLGKQAYSGETQSEGGFAPNRVSAASLLDVSTTTDKKGKTYYKYELLVRSADGDEGGRHQLIGATV 209          
BLAST of CF835715 vs. ExPASy Swiss-Prot
Match: PSBP2_ARATH (Putative oxygen-evolving enhancer protein 2-2 OS=Arabidopsis thaliana GN=PSBP2 PE=5 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 7.589e-33
Identity = 71/90 (78.89%), Postives = 80/90 (88.89%), Query Frame = 3
Query:  432 IITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATV 689
            +ITPTDKKSITDYGSPE+FLS+V+YLLGKQAY G+T+SEGGFD +AVATANILE S +      YY+LSVLTRTADGDEGGKHQLITATV
Sbjct:    1 MITPTDKKSITDYGSPEQFLSQVNYLLGKQAYVGETASEGGFDANAVATANILETSTQEIGGKEYYYLSVLTRTADGDEGGKHQLITATV 90          
The following BLAST results are available for this feature:
BLAST of CF835715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSBP_SINAL1.192e-8670.87Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_NARPS4.541e-7865.40Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_BRAJU1.725e-7777.47Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_WHEAT1.461e-7665.94Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_CHLRE3.871e-5351.32Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP2_ARATH7.589e-3378.89Putative oxygen-evolving enhancer protein 2-2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835715 ID=CF835715; Name=CF835715; organism=Citrus sinensis; type=EST; length=690bp
GAAGAGAGCGAAAAGAAAAAATGGCTTCAACTCAATGCTTCTTGCACCAC
CATGCACTCTCTACTACACCAGCAAGAACATCATCATCTCAGCGCCACGT
GTCAAACATCAAGCCCACCCAGATTGTCTGCCGTGCGCAGAAGCAAGCTG
TCCAAGAAGATGACGGCAGCGCCGTCTCCCGCCGTTTGGCTCTGACGGTG
CTCATTGGTGCTGCTGCCGTCGGCTCCAAGGTCTCTCCTGCCGACGCTGC
CTACGGTGAATCTGCCAATGTGTTTGGTAAGCCAAAGACCAACACTGACT
TCTTGCCATACAATGGAGATGGATTCAAGCTGTCGATTCCCTCAAAATGG
AACCCCAGCAAAGAGAGAGAGTTCCCTGGTCAGGTTCTTAGATACGAAGA
CAACTTTGATCCCAACAGCAATGTCTCCGTCATAATCACCCCAACTGACA
AGAAATCCATCACTGACTACGGTTCCCCCGAGGAATTCCTCAGTAAGGTG
GACTACTTGCTGGGAAAACAAGCCTATTCCGGCAAAACTTCGTCTGAGGG
TGGTTTCGACCCTGATGCTGTGGCAACAGCTAACATCTTGGAGGCTTCAG
TCCGACCACCATACTACTTCTTGTCTGTATTAACAAGAACTGCTGATGGA
GATGAAGGTGGCAAGCATCAACTAATTACAGCCACGGTTA
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