CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:165..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_COXB1 (60 kDa chaperonin OS=Coxiella burnetii (strain CbuK_Q154) GN=groL PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 49/113 (43.36%), Postives = 74/113 (65.49%), Query Frame = -1
Query:  370 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGGNPMANSG 705
            ++N++++VG +I +RA+ YPL  I KN GV  +VV++KVL+  +  YG NAATG Y D++  GI+DP KV R  L++A+S A   + ++C   E  K+ E +MPGG  M   G
Sbjct:  431 VENEDQRVGVEIARRAMAYPLSQIVKNTGVQAAVVADKVLNHKDVNYGYNAATGEYGDMIEMGILDPTKVTRTALQNAASIAGLMITTECMVTEAPKKKEESMPGGGDMGGMG 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_MAGSM (60 kDa chaperonin OS=Magnetococcus sp. (strain MC-1) GN=groL PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 52/112 (46.43%), Postives = 72/112 (64.29%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 699
            N +++VG +IV RAL  PL++IA N G  GSVV  +V+      +G NAATG YEDL+A+G+IDP KVVR  L+ A+S A   + ++    E+ + EPAMPGG+     G G
Sbjct:  434 NHDQQVGINIVTRALEEPLRIIASNAGAEGSVVVNRVVETKETNFGFNAATGVYEDLVASGVIDPAKVVRHALQAAASVAGLMITTEAMVAELPKDEPAMPGGDMGGMGGMG 545          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_SYNP6 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 54/108 (50.00%), Postives = 70/108 (64.81%), Query Frame = -1
Query:  370 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 693
            +EK+G +IV RAL  PL+ IA N G  GSVV EK+  + +  +G NA TG YEDL+A+GI+DP KVVR  L+ A+S A   L ++   V+  EPEPAMP G  M   G
Sbjct:  436 DEKLGVEIVARALEAPLRQIADNAGAEGSVVVEKLRDK-DFNFGYNALTGQYEDLVASGILDPAKVVRSALQDAASVASLILTTEVLVVDQPEPEPAMPAGGDMGGMG 542          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_HYPNA (60 kDa chaperonin OS=Hyphomonas neptunium (strain ATCC 15444) GN=groL PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 699
            ND+EK G DIV++AL  P++ IA+N GV GSVV   +L+  +  YG NA T  Y DL+A G+IDP KVVR  L++A+S A   + ++ G  E  + E A  GG P    G G
Sbjct:  432 NDDEKAGIDIVRKALEAPIRQIAENAGVEGSVVVNTILNNKSRSYGFNAQTEEYGDLVAMGVIDPVKVVRSALQNAASIASLLITTEAGIAEAPKKESAGGGGMPGGMGGMG 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_GLUDA (60 kDa chaperonin 1 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19
Identity = 51/111 (45.95%), Postives = 74/111 (66.67%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE-PAMPGGNPMANSG 699
            ND+++VGA+I+++AL  PL+ IA N G +G+V++ KVL   ++ YG +A  G+Y+DL+AAGIIDP KVVR  L+ ASS A   + ++    E  E + PAMP G  M   G
Sbjct:  433 NDDQRVGAEIIRKALQAPLRQIAHNAGEDGAVIAGKVLESNDYNYGFDAQIGDYKDLVAAGIIDPTKVVRTALQDASSVAGLLITTEAMVAEKPEKKAPAMPAGGGMGGMG 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_RHORT (60 kDa chaperonin 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 48/111 (43.24%), Postives = 74/111 (66.67%), Query Frame = -1
Query:  367 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGY 699
            N ++KVG +IV+RAL  P++ IA+N GV+G+VV+ K+L  ++  +G NA TG YE+L+  G+IDP KVVR  L+ A+S A   + ++    EI E +PA+P G  M +  +
Sbjct:  433 NADQKVGIEIVRRALQAPVRQIAENAGVDGAVVAGKLLESSDADFGYNAQTGVYENLVKVGVIDPTKVVRTALQGAASVASLLITTEAMVAEIPEKKPALPAGGGMGDMDF 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_ANASL (60 kDa chaperonin 2 OS=Anabaena sp. (strain L31) GN=groL2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 55/109 (50.46%), Postives = 71/109 (65.14%), Query Frame = -1
Query:  370 DEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 696
            +EEK+GADIVKRAL  PL+ IA N G  GSV+  +V   ++   G NAATG +EDL+AAGIIDP KVVR  L++A+S A   L ++   VE  E +PA+P    M   G
Sbjct:  433 EEEKIGADIVKRALEAPLRQIADNAGEEGSVIVSRVKD-SDFNVGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKPAVPADPGMGGMG 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_SYNS9 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9902) GN=groL1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.560e-19
Identity = 51/111 (45.95%), Postives = 72/111 (64.86%), Query Frame = -1
Query:  361 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYGY 693
            EE +GA+IV  AL  PL  IA+N G NG+VV+E V SR+N++ G NAA G+Y D++AAGI+DP KV R  L++A+S A   L ++C   ++ E + A P G  M    + Y
Sbjct:  435 EELIGANIVAAALTAPLMRIAENAGANGAVVAENVKSRSNNE-GYNAANGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDAAPAGGGMGGGDFDY 544          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_SOLUE (60 kDa chaperonin OS=Solibacter usitatus (strain Ellin6076) GN=groL PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = -1
Query:  391 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGG 693
            +E++G  IVKRA   PL+ I  N G  G++V +KV   AN+ YG NAAT  YEDL+AAG+IDP KV R  L+HA+S A   L ++    EI E + A  GG
Sbjct:  432 DEQIGVSIVKRACEEPLRQIVSNSGTEGAIVVDKVRENANNNYGYNAATDTYEDLVAAGVIDPTKVTRSALQHAASIAGLMLTTEAMIAEIPEKKSAPAGG 532          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 59/124 (47.58%), Postives = 73/124 (58.87%), Query Frame = -1
Query:  334 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYGY*AN*QGPGG 705
            L+N+EEK+GADIV+RAL  PL  IA N GV GSV+ EKV S  +   G N  TG YEDL+AAGI+DP  VVR  L++A S A   L ++   VE    +P   G  P  + G G      G GG
Sbjct:  431 LNNEEEKIGADIVRRALEAPLNQIANNSGVEGSVIVEKVRS-TDFSVGYNVITGEYEDLIAAGILDPAMVVRSALQNAGSIAGMVLTTEAVVVE----KPEKKGAAPDMDGGMGGMGGMGGMGG 549          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_COXB19.153e-2143.3660 kDa chaperonin OS=Coxiella burnetii (strain Cbu... [more]
CH60_MAGSM3.478e-2046.4360 kDa chaperonin OS=Magnetococcus sp. (strain MC-... [more]
CH602_SYNP63.478e-2050.0060 kDa chaperonin 2 OS=Synechococcus sp. (strain A... [more]
CH60_HYPNA1.726e-1945.5460 kDa chaperonin OS=Hyphomonas neptunium (strain ... [more]
CH601_GLUDA2.255e-1945.9560 kDa chaperonin 1 OS=Gluconacetobacter diazotrop... [more]
CH601_RHORT3.846e-1943.2460 kDa chaperonin 1 OS=Rhodospirillum rubrum (stra... [more]
CH602_ANASL5.023e-1950.4660 kDa chaperonin 2 OS=Anabaena sp. (strain L31) G... [more]
CH601_SYNS96.560e-1945.9560 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH60_SOLUE8.567e-1948.5160 kDa chaperonin OS=Solibacter usitatus (strain E... [more]
CH601_TRIEI8.567e-1947.5860 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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