CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_ROSDO (60 kDa chaperonin 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=groL2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 47/113 (41.59%), Postives = 67/113 (59.29%), Query Frame = -1
Query:  364 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 702
            DN+++ VG  IV++AL  PL+ IA+N GV+GSVV+ K+    + K+G NA T  Y D+ A G+IDP KVVR  L+ A+S A   + ++    +    E A PGG      G G
Sbjct:  432 DNNDQNVGISIVRKALEAPLRQIAENAGVDGSVVAGKIRESDDLKFGFNAQTEEYGDMFAFGVIDPAKVVRTALQDAASIAGLLITTEAMVADRPAKEGAAPGGGMPDMGGMG 544          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_CORDI (60 kDa chaperonin 2 OS=Corynebacterium diphtheriae GN=groL2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 52/110 (47.27%), Postives = 65/110 (59.09%), Query Frame = -1
Query:  367 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEP-EPAMPGGNPMANSGY 693
            +E  G  IV+ AL  PLK IA N G+   VV++KV S      G NAATG Y DLMAAGI DP KV R  L++A+S A  FL ++    +  EP  PAMPG + M   G+
Sbjct:  438 DEATGVKIVREALSAPLKQIALNAGLEAGVVADKV-SHLPAGEGLNAATGEYVDLMAAGINDPVKVTRSALQNAASIAALFLTTEAVVADKPEPAAPAMPGADEMGGMGF 546          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_SPHAL (60 kDa chaperonin 1 OS=Sphingopyxis alaskensis GN=groL1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = -1
Query:  388 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGN 699
            ND++  G DI+++A+  PL+ IA N G +G+VV+  +L   + + G NAAT  YE+L AAG+IDP KVVR  L+ A+S A   + ++    E+ E +PAMP G+
Sbjct:  433 NDDQTRGIDIIRKAIETPLRQIAANAGHDGAVVAGNLLRVGDVEQGFNAATDVYENLKAAGVIDPTKVVRTALQDAASVAGLLITTEAAVSELPEDKPAMPMGS 536          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 52/109 (47.71%), Postives = 66/109 (60.55%), Query Frame = -1
Query:  370 DEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 696
            DEEKVGAD+V  AL  PL  IA N G  G+VV EKV   A+  YG NA T  YED++AAG++DP KVVR  L++A S A   L ++   + + +PEPA      M   G
Sbjct:  433 DEEKVGADLVGIALEAPLTQIADNAGKEGAVVVEKVRD-ADFSYGYNAMTDTYEDMIAAGVVDPAKVVRSGLQNAGSIAGMVLTTE--ALVVDKPEPAGAAAPDMGGMG 538          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_SULNB (60 kDa chaperonin OS=Sulfurovum sp. (strain NBC37-1) GN=groL PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 47/108 (43.52%), Postives = 68/108 (62.96%), Query Frame = -1
Query:  385 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKE---PEPAMP--GGNP 693
            +E VGA+I+ RA+  P+K IA+N G +  VV++K+ + +    G NAATG Y +++ AGIIDP KV R  L++A+S A   L ++    +IKE   P P MP  GG P
Sbjct:  432 DEAVGAEIILRAVYAPMKQIAQNAGFDAGVVADKIANNSEANLGFNAATGEYVNMLEAGIIDPLKVARVALQNATSVASLLLTTEATVSDIKEAPTPAPTMPDMGGMP 539          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_PROVI (60 kDa chaperonin OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=groL PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 49/114 (42.98%), Postives = 66/114 (57.89%), Query Frame = -1
Query:  364 DNDEEKVGADIVKRALCYPLKLIAKNPGV-NGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 702
            DND++K G +I++RAL  PL+ I  N G  +G+VV E V       YG NA T  YE+L+ AG++DP KV R  LE+A+S A   L ++    +IKE  P MP   P    G G
Sbjct:  432 DNDDQKTGIEIIRRALEEPLRQIVANTGTTDGAVVLEHV-KNGEGDYGFNARTEQYENLVEAGVVDPTKVTRSALENAASVASILLTTEACITDIKENTPDMPAMPPGGMGGMG 544          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_DESVM (60 kDa chaperonin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=groL PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 47/114 (41.23%), Postives = 67/114 (58.77%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKE--PEPAMPGGNPMANSGYG 699
            +D+E  G +I++RA+  PL+ I+ N G  GS+V EKV       +G NAA+G +EDL+ AG+IDP KV R  L++A+S A   L ++C   E  E   +  MPGG      G G
Sbjct:  433 DDDEAAGVNIIRRAIEEPLRQISSNAGYEGSIVVEKVRD-GKDGFGFNAASGEFEDLIKAGVIDPKKVTRIALQNAASVASLLLTTECAIAEKPEAKKDMPMPGGGMGGMGGMG 545          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CHLTE (60 kDa chaperonin OS=Chlorobium tepidum GN=groL PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 48/108 (44.44%), Postives = 68/108 (62.96%), Query Frame = -1
Query:  391 DNDEEKVGADIVKRALCYPLKLIAKNPGV-NGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE---PAMPGG 702
            DN+++K G +I++RAL  PL+ I  N G  +G+VV EKV   A   YG NA T  YE+L+ AG++DP KV R  LE+A+S A   L ++    ++KE +   PAMP G
Sbjct:  432 DNEDQKTGIEIIRRALEEPLRQIVANTGTTDGAVVLEKV-KNAEGDYGFNARTEQYENLIEAGVVDPTKVTRSALENAASVASILLTTEAAITDVKEDKADMPAMPPG 538          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CHLL2 (60 kDa chaperonin OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=groL PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 48/114 (42.11%), Postives = 69/114 (60.53%), Query Frame = -1
Query:  364 DNDEEKVGADIVKRALCYPLKLIAKNPGV-NGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 702
            DN+++K G +I++RAL  PL+ I  N G  +G+VV EKV + A   +G NA T  YE+L+ AG++DP KV R  LE+A+S A   L ++    +IKE +  MP   P    G G
Sbjct:  432 DNEDQKTGIEIIRRALEEPLRQIVANTGTTDGAVVLEKVKA-AEGDFGFNARTEQYENLVEAGVVDPTKVTRSALENAASVASILLTTEAAITDIKEEKSDMPAMPPGGMGGMG 544          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH603_BRAJA (60 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN=groL3 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 44/115 (38.26%), Postives = 69/115 (60.00%), Query Frame = -1
Query:  367 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE---PAMPGGNPMANSGY 702
            +ND++K G +IV++AL +P + IA N G +GS+V  KVL    + +G +A TG Y +L++ GIIDP KVVR  +++ASS A   + ++    E+ +     PAMP    M    +
Sbjct:  432 ENDDQKTGVEIVRKALSWPARQIAINAGEDGSIVVGKVLDNEQYSFGFDAQTGEYSNLVSKGIIDPAKVVRIAVQNASSVAGLLITTEAMVAELPKKATAGPAMPAAPGMGGMDF 546          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_ROSDO5.198e-1641.5960 kDa chaperonin 2 OS=Roseobacter denitrificans (... [more]
CH602_CORDI5.198e-1647.2760 kDa chaperonin 2 OS=Corynebacterium diphtheriae... [more]
CH601_SPHAL5.198e-1643.2760 kDa chaperonin 1 OS=Sphingopyxis alaskensis GN=... [more]
CH601_ACAM15.198e-1647.7160 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH60_SULNB6.788e-1643.5260 kDa chaperonin OS=Sulfurovum sp. (strain NBC37-... [more]
CH60_PROVI6.788e-1642.9860 kDa chaperonin OS=Prosthecochloris vibrioformis... [more]
CH60_DESVM8.866e-1641.2360 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH60_CHLTE8.866e-1644.4460 kDa chaperonin OS=Chlorobium tepidum GN=groL PE... [more]
CH60_CHLL28.866e-1642.1160 kDa chaperonin OS=Chlorobium limicola (strain D... [more]
CH603_BRAJA8.866e-1638.2660 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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