CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_NOCSJ (60 kDa chaperonin 2 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=groL2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 53/109 (48.62%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  370 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLS-RANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 693
            +E VGA IV+ A   PLK IA N G+ G VV+EKV    A H  G NAATG Y D++A+GIIDP KV R  L++A+S A  FL ++   V   +PE A P G+P    G
Sbjct:  433 DEAVGAQIVRFATDAPLKQIAINAGLEGGVVAEKVRGLTAGH--GLNAATGEYVDMIASGIIDPAKVTRSALQNAASIAALFLTTE--AVVADKPEKAAPMGDPSGGMG 537          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_COREF (60 kDa chaperonin 2 OS=Corynebacterium efficiens GN=groL2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 57/120 (47.50%), Postives = 70/120 (58.33%), Query Frame = -1
Query:  370 LDND-----EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEP---AMPGGNPMANSG 705
            LDND     +E  G  IV+ AL  PLK IA N G+   VV++KV SR     G NAATG Y DLMAAGI DP KV R  L++A+S A  FL ++   V   +P+P   AMPG + M   G
Sbjct:  429 LDNDLDLTGDEATGVRIVRDALTAPLKQIAANAGLEPGVVADKV-SRLPEGEGLNAATGEYVDLMAAGINDPVKVTRSALQNAASIAALFLTTE--AVVADKPQPAGAAMPGADEMGGMG 545          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_SYNY3 (60 kDa chaperonin 1 OS=Synechocystis sp. (strain PCC 6803) GN=groL1 PE=1 SV=4)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 52/110 (47.27%), Postives = 68/110 (61.82%), Query Frame = -1
Query:  367 DEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGY 696
            DEE  GA IV RAL  PLK IA+N G NG+V+SE+V  +     G NAA+  Y D++AAGI+DP KV R  L++A+S A   L ++C  V+  E E A P G P  +  Y
Sbjct:  434 DEELTGALIVARALPAPLKRIAENAGQNGAVISERVKEK-EFNVGYNAASLEYVDMLAAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEKEKA-PAGAPGGDFDY 541          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_RHOPA (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris GN=groL1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 46/112 (41.07%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  370 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGGNPMANSG 702
            DN + + G +IV +AL  P++ IA+N GV GS+V  K+L      +G +A T  Y D++A GI+DP KVVR  L+ ASS A   + ++    E+ K   PAMP G  M   G
Sbjct:  432 DNPDVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKTETFGFDAQTEEYVDMLAKGIVDPAKVVRTALQDASSVASLLVTTEAMVAELPKADAPAMPAGGGMGGMG 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_SCAIO (60 kDa chaperonin OS=Scardovia inopinata GN=groL PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 50/109 (45.87%), Postives = 66/109 (60.55%), Query Frame = -1
Query:  367 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGY 693
            +E  GA IV RA+  PLK IA+N G +G VV +KV +      G NAATG YEDL++AG+ DP KV R  L++A+S A  FL ++   V   +PEP  P   P  + GY
Sbjct:  433 DEATGAGIVFRAIEAPLKQIAQNAGFSGEVVIDKVRTLPAGS-GLNAATGEYEDLLSAGVTDPVKVTRSALQNAASIAGLFLTTE--AVVANKPEPPAPAAAPNPDMGY 538          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_NOVAD (60 kDa chaperonin OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=groL PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = -1
Query:  397 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMP 699
            ND++  G DIV+RA+  P++ IA N G +G+VVS  +L   +   G NAAT  YE+L AAG+IDP KVVR  L+ A+S +   + ++    E  + +PAMP
Sbjct:  433 NDDQTKGIDIVRRAIQAPIRQIAANAGHDGAVVSGNLLRENDENQGFNAATDTYENLKAAGVIDPTKVVRTALQDAASVSGLLITTEAAISEKPDDKPAMP 533          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_HYDS0 (60 kDa chaperonin OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=groL PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = -1
Query:  397 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMP 699
            N + ++G  IV  A  YPLK IA N G  GS+V EKV    +  YG +AA G Y+D++ AGIIDP KVVR  L++A+S A T L ++    E+ E +   P
Sbjct:  433 NKDRELGVKIVYNACKYPLKQIAYNAGYEGSLVLEKVYEDQDKNYGFDAANGEYKDMVKAGIIDPTKVVRTALQNAASAAGTMLTAEALIAELPEKKEKTP 533          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_FLAPJ (60 kDa chaperonin OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=groL PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 50/109 (45.87%), Postives = 64/109 (58.72%), Query Frame = -1
Query:  385 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPA---MPGGNP 702
            DN +E  G  IV RA+  PL+ I +N G+ GSVV  KV +  +  +G NA T  Y D++ AGIIDP KV R  LE+A+S A   L ++C  VEIKE       M GG P
Sbjct:  432 DNADEATGIQIVSRAVEAPLRTIVENAGLEGSVVVAKV-AEGSGDFGYNAKTDEYVDMLKAGIIDPKKVTRVALENAASVAGMILTTECALVEIKEENAGGGQMGGGMP 539          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CLONN (60 kDa chaperonin OS=Clostridium novyi (strain NT) GN=groL PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 47/113 (41.59%), Postives = 67/113 (59.29%), Query Frame = -1
Query:  370 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI--KEPEPAMPGGNPMANSG 702
            DN E ++G  I++RAL  P++ IA N G+ GSV+ +K+   +    G +A  G Y ++M  GI+DP KV R  L++A+S A TFL ++C   EI  K P PA PG   M   G
Sbjct:  430 DNAEVRLGIAIIRRALEEPVRQIAANAGLEGSVIIDKI-KNSEDGIGFDALEGEYTNMMQKGIVDPAKVTRSALQNAASVASTFLTTECVVAEIPEKNPMPAAPGMGGMGMDG 541          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_PROM5 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9515) GN=groL2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 46/111 (41.44%), Postives = 69/111 (62.16%), Query Frame = -1
Query:  361 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYGY 693
            EE +GA+IV+ +L  PL  IA+N G NG+V++E V S+  +  G NAATG Y D+ +AGI+DP KV R  L++A+S A   L ++C   ++ E + + P G P     + Y
Sbjct:  435 EELIGANIVEASLTAPLMRIAENAGSNGAVIAENVKSKPFND-GFNAATGEYVDMSSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADMPEKKESAPAGAPGMGGDFDY 544          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_NOCSJ8.866e-1648.6260 kDa chaperonin 2 OS=Nocardioides sp. (strain BA... [more]
CH602_COREF8.866e-1647.5060 kDa chaperonin 2 OS=Corynebacterium efficiens G... [more]
CH601_SYNY38.866e-1647.2760 kDa chaperonin 1 OS=Synechocystis sp. (strain P... [more]
CH601_RHOPA8.866e-1641.0760 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH60_SCAIO1.158e-1545.8760 kDa chaperonin OS=Scardovia inopinata GN=groL P... [more]
CH60_NOVAD1.158e-1543.5660 kDa chaperonin OS=Novosphingobium aromaticivora... [more]
CH60_HYDS01.158e-1544.5560 kDa chaperonin OS=Hydrogenobaculum sp. (strain ... [more]
CH60_FLAPJ1.158e-1545.8760 kDa chaperonin OS=Flavobacterium psychrophilum ... [more]
CH60_CLONN1.158e-1541.5960 kDa chaperonin OS=Clostridium novyi (strain NT)... [more]
CH602_PROM51.158e-1541.4460 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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