CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_NITHX (60 kDa chaperonin 2 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 42/114 (36.84%), Postives = 69/114 (60.53%), Query Frame = -1
Query:  367 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE---PAMPGGNPMANSGY 699
            ND++K G +IV++AL  P + IA N G +GSV+  K+L +  + YG ++ +G Y +L++ GIIDP KVVR  +++A+S A   + ++    E+ +     PAMP G  M    +
Sbjct:  433 NDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQSGEYGNLISKGIIDPTKVVRAAIQNAASVAALLITTEAMVAELPKKNAGGPAMPAGGGMGGMDF 546          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_MESSB (60 kDa chaperonin 2 OS=Mesorhizobium sp. (strain BNC1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = -1
Query:  382 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVE--IKEPEPAMPGGNPM 702
            +N+++KVG  IV+RA+  P++ IA+N G  GS++  +V  + +  YG NA TG Y DL   G+IDP KVVR  L+ A+S A   + ++    +   KE  PAMP G  M
Sbjct:  432 ENEDQKVGISIVRRAIEAPIRQIAENAGAEGSIIVGRVREKPDFGYGWNAQTGEYGDLYQMGVIDPVKVVRAALQDAASVAGLLITTEAMVADRPKKETAPAMPAGAGM 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_ERYLH (60 kDa chaperonin 2 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 46/113 (40.71%), Postives = 66/113 (58.41%), Query Frame = -1
Query:  364 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 702
            +ND++  G DIV++A+  P++ IA N G +G+V+S  +L   N   G NAAT  YEDL+ AG+IDP KVVR  L+ A+S A   + ++    E+  PE    GG      G G
Sbjct:  432 ENDDQTRGIDIVRKAIVAPVRQIATNAGHDGAVISGNLLREDNESQGFNAATDTYEDLVKAGVIDPTKVVRVALQDAASVAGLLITTEAAISEV--PEDKSSGGGMPDMGGMG 542          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_SALTO (60 kDa chaperonin 1 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=groL1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 53/102 (51.96%), Postives = 61/102 (59.80%), Query Frame = -1
Query:  391 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLS-RANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGG 693
            +E  GA IVK AL  PL+ IA N G+ G VV E V    A H  G NAATG Y DLMAAGIIDP KV R  L++ASS A  FL ++    +  E  PA P G
Sbjct:  433 DEATGAQIVKIALDGPLRQIAVNAGLEGGVVVEHVRGIEAGH--GLNAATGGYVDLMAAGIIDPAKVTRSALQNASSIAALFLTTEAVVADKPEKTPAAPAG 532          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_RHOPS (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisB5) GN=groL1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 699
            ND++K G +IV++AL  P + IA N G +GSV+  KVL +  + YG ++ TG Y DL+  GIIDP KVVR  +++A+S A   + ++    E+ +   A  GG P    G G
Sbjct:  433 NDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKVLEKDQYNYGFDSQTGEYGDLVKKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGGA-AGGMPPGGGGMG 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_RHOP5 (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisA53) GN=groL1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = -1
Query:  370 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGGNPMANSG 702
            DN + + G +IV +AL  P++ IA+N GV GS+V  K+L   +  +G +A T  Y D++A GI+DP KVVR  L+ A+S +   + ++    E+ ++  PAMPGG  M   G
Sbjct:  432 DNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMLAKGIVDPAKVVRTALQDAASVSALLVTTEAMVAELPRDAAPAMPGGGGMGGMG 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_PROMS (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain AS9601) GN=groL1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 50/113 (44.25%), Postives = 66/113 (58.41%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE---PAMPGGNPMANSG 699
            +D+ + G +IVK AL  P K IAKN G NG VV  ++  R N   G NA +G YEDL  +GI+DP KV+R  L+ + S A   L ++    +I EPE   P  PGG+PM   G
Sbjct:  432 SDDLRTGINIVKEALLEPTKQIAKNAGFNGDVVVAEI-QRLNK--GFNANSGQYEDLKDSGILDPTKVIRLALQDSVSIAAMLLTTEVAMADIPEPEAAAPGGPGGDPMGGMG 541          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_DESAA (60 kDa chaperonin OS=Desulfatibacillum alkenivorans (strain AK-01) GN=groL PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 50/114 (43.86%), Postives = 66/114 (57.89%), Query Frame = -1
Query:  364 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE----PAMPGGNPMANSGYG 693
            E+K+GA +V RAL  PL++IA N G+ GSVV +KV       +G NA T  YEDL+ AG+IDP KVVR  L++A S A   L ++    +  +      PAMPGG      G G
Sbjct:  433 EQKIGARVVMRALEAPLRMIANNAGMEGSVVLDKV-KNTEGSFGYNADTDTYEDLIEAGVIDPTKVVRLALQNACSIAGLMLTTEAMIADKPDENAGGMPAMPGGGMGGMGGMG 545          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH605_RHIME (60 kDa chaperonin 5 OS=Rhizobium meliloti GN=groL5 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 44/108 (40.74%), Postives = 65/108 (60.19%), Query Frame = -1
Query:  382 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVE--IKEPEPAMPGGNPM 699
            N++++VG D+V+RA+  P++ IA+N G  GS++  K+  +    YG NA T  Y DL A G+IDP KVVR  L+ A+S A   + ++    E   KE  PA+P G  M
Sbjct:  433 NNDQRVGVDLVRRAIEAPVRQIAENAGAEGSIIVGKLREKTEFSYGWNAQTNEYGDLYAMGVIDPAKVVRTALQDAASVAGLLVTTEAMIAEKPKKEAAPALPAGGGM 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH603_RHIL3 (60 kDa chaperonin 3 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=groL3 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 46/108 (42.59%), Postives = 65/108 (60.19%), Query Frame = -1
Query:  382 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVE--IKEPEPAMPGGNPM 699
            N +++VG DIV+RA+  P + IA+N G  GSV+  K+  ++   YG NA TG Y DL A G+IDP KVVR  L+ A+S A   + ++    E   K+  P MP G+ M
Sbjct:  433 NGDQRVGVDIVRRAVEAPARQIAENAGAEGSVIVGKLREKSEFSYGWNAQTGEYGDLYAQGVIDPAKVVRTALQDAASIAGLLVTTEAMIAEKPRKDAPPPMPAGHGM 540          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_NITHX1.158e-1536.8460 kDa chaperonin 2 OS=Nitrobacter hamburgensis (s... [more]
CH602_MESSB1.158e-1541.2860 kDa chaperonin 2 OS=Mesorhizobium sp. (strain B... [more]
CH602_ERYLH1.158e-1540.7160 kDa chaperonin 2 OS=Erythrobacter litoralis (st... [more]
CH601_SALTO1.158e-1551.9660 kDa chaperonin 1 OS=Salinispora tropica (strain... [more]
CH601_RHOPS1.158e-1540.1860 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH601_RHOP51.158e-1539.2960 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH601_PROMS1.158e-1544.2560 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_DESAA1.512e-1543.8660 kDa chaperonin OS=Desulfatibacillum alkenivoran... [more]
CH605_RHIME1.512e-1540.7460 kDa chaperonin 5 OS=Rhizobium meliloti GN=groL5... [more]
CH603_RHIL31.512e-1542.5960 kDa chaperonin 3 OS=Rhizobium leguminosarum bv.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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