CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH603_BRASO (60 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain ORS278) GN=groL3 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGGNPMANSG 699
            N + + G +IV +AL  P++ IA+N GV GS+V  K+L   +  +G +A T +Y D++A GIIDP KVVR  L+ ASS A   + ++    E+ K+  PAMP G  M   G
Sbjct:  433 NSDVQAGINIVLKALEAPMRQIAENAGVEGSIVVGKILEEKSETFGFDAQTEDYVDMVAKGIIDPAKVVRTALQDASSVAGLLVTTEAMVAELPKDAAPAMPAGGGMGGMG 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_SYNS3 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9311) GN=groL2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 47/104 (45.19%), Postives = 68/104 (65.38%), Query Frame = -1
Query:  382 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPM 693
            EE +GA+IV  AL  PL  IA+N GVNG+VV+E V S++ ++ G NAA G Y D+++AGI+DP KV R  L++A+S A   L ++C   ++ E + A   G  M
Sbjct:  435 EELIGANIVASALTAPLMRIAENAGVNGAVVAENVKSKSFNE-GYNAANGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADMPEKKEAAAAGGGM 537          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_PROM9 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9312) GN=groL2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 48/112 (42.86%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  361 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKE-PEPAMPGGNPMANSGYGY 693
            EE +GA+IV+ +L  PL  IA+N G NG+V++E V S+  +  G NAATG Y D+ +AGI+DP KV R  L++A+S A   L ++C   ++ E  + A PGG P     + Y
Sbjct:  435 EELIGANIVEASLTAPLMRIAENAGSNGAVIAENVKSKPFND-GFNAATGEYVDMSSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDAATPGGAPGMGGDFDY 545          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_CHRVO (60 kDa chaperonin 2 OS=Chromobacterium violaceum GN=groL2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 49/113 (43.36%), Postives = 65/113 (57.52%), Query Frame = -1
Query:  370 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPA--MPGGNPMANSG 702
            DN E++ G  IV RA+  PL+ I KN G   SVV  KVL    + +G NAA+G Y D++  G++DP KV R  L+HA+S A   L +DC   E+ E +PA  MP    M   G
Sbjct:  432 DNAEQEAGVKIVLRAIEAPLRQIVKNAGDEPSVVVNKVLEGKGN-FGYNAASGEYGDMLEMGVLDPAKVTRSALQHAASVAGLMLTTDCMIAELPEDKPAAGMPDMGGMGGMG 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_SYNS3 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9311) GN=groL1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 51/111 (45.95%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  370 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMP---GGNPMANSG 693
            ++K G +IV+RAL  PL+ IA+N G NG VV ++V    N   G NA TGN+EDLM AGI+D  KVVR  L+ A S A   + ++   V   +PEP  P   GG+PM   G
Sbjct:  434 DQKTGVEIVQRALSAPLRQIAENAGSNGDVVVDRV---RNSGEGFNALTGNFEDLMNAGILDASKVVRLALQDAVSIASLVVTTEV--VVADKPEPPAPAGGGGDPMGGMG 539          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_SALAI (60 kDa chaperonin 1 OS=Salinispora arenicola (strain CNS-205) GN=groL1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 57/110 (51.82%), Postives = 65/110 (59.09%), Query Frame = -1
Query:  382 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLS-RANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE-----PAMPGGNPM 693
            +E  GA IVK AL  PL+ IA N G+ G VV E V    A H  G NAATG Y DLMAAGIIDP KV R  L++ASS A  FL ++   V   +PE     PA PGG  M
Sbjct:  433 DEATGAQIVKIALDGPLRQIAVNAGLEGGVVVEHVRGIEAGH--GLNAATGGYVDLMAAGIIDPAKVTRSALQNASSIAALFLTTE--AVVADKPEKTPAAPAAPGGGEM 538          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_ERYLH (60 kDa chaperonin 1 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 44/100 (44.00%), Postives = 66/100 (66.00%), Query Frame = -1
Query:  403 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPA 699
            ND+++ G DIV+RAL  P + IA+N G +G+ +  K+L   ++ +G NAATG YEDL+ +G+IDP KVVR  L+ A+S A   + ++    E+ KE  PA
Sbjct:  433 NDDQQSGIDIVRRALRAPARQIAENAGEDGAYIVGKLLEGDDYNHGFNAATGEYEDLVKSGVIDPAKVVRTALQDAASVASLLITTEALVAELPKEDTPA 532          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_RHOCA (60 kDa chaperonin OS=Rhodobacter capsulatus GN=groL PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = -1
Query:  391 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGG 699
            N ++  G  IV+RAL  PL+ IA+N GV+G+VV+ KV   A+  +G NA T  Y D+   G+IDP KV R  LE A+S A   + ++C   E  EP+ A  GG
Sbjct:  433 NSDQDAGISIVRRALEAPLRQIAENAGVDGAVVAGKVRESADPAFGFNAQTEEYGDMFGFGVIDPAKVTRTALEDAASIAGLLITTECMIAEKPEPKAAPAGG 535          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CYTH3 (60 kDa chaperonin OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=groL PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 47/112 (41.96%), Postives = 64/112 (57.14%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 699
            N++EK G  I++ A+  PL+ I  N G+ GSV+ +KV       YG NA    YE ++AAGIIDP KV R  LE+A+S A   L ++C   +  E + AMP   PM   G G
Sbjct:  432 NEDEKTGIQIIRTAIESPLRAIVYNAGLEGSVIVQKV-KEGTGDYGYNAREDRYEAMIAAGIIDPTKVTRLALENAASVASLLLTTECVVADEPEEKSAMP---PMGGGGMG 539          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CHLPD (60 kDa chaperonin OS=Chlorobium phaeobacteroides (strain DSM 266) GN=groL PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 47/114 (41.23%), Postives = 67/114 (58.77%), Query Frame = -1
Query:  364 DNDEEKVGADIVKRALCYPLKLIAKNPGV-NGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 702
            DN+++K G +I++RAL  PL+ I  N G  +G+VV EKV       +G NA T  YE+L+ AG++DP KV R  LE+A+S A   L ++    +IKE +  MP   P    G G
Sbjct:  432 DNEDQKTGIEIIRRALEEPLRQIVANTGTTDGAVVLEKV-KNGEGDFGFNARTEQYENLVEAGVVDPTKVTRSALENAASVASILLTTEAAITDIKEEKSDMPAMPPGGMGGMG 544          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH603_BRASO1.512e-1541.4460 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain ... [more]
CH602_SYNS31.512e-1545.1960 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH602_PROM91.512e-1542.8660 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_CHRVO1.512e-1543.3660 kDa chaperonin 2 OS=Chromobacterium violaceum G... [more]
CH601_SYNS31.512e-1545.9560 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH601_SALAI1.512e-1551.8260 kDa chaperonin 1 OS=Salinispora arenicola (stra... [more]
CH601_ERYLH1.512e-1544.0060 kDa chaperonin 1 OS=Erythrobacter litoralis (st... [more]
CH60_RHOCA1.975e-1543.6960 kDa chaperonin OS=Rhodobacter capsulatus GN=gro... [more]
CH60_CYTH31.975e-1541.9660 kDa chaperonin OS=Cytophaga hutchinsonii (strai... [more]
CH60_CHLPD1.975e-1541.2360 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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