CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CLOAB (60 kDa chaperonin OS=Clostridium acetobutylicum GN=groL PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 45/115 (39.13%), Postives = 70/115 (60.87%), Query Frame = -1
Query:  361 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE-PAMPGGNPMANSGYGY 702
            D  + +VG +I+ +AL  P++ IA N G+ GSV+ EK+++ +    G +A    Y D+++ GI+DP KV R  L++A+S A TFL ++C   +I E + P MPGG P    G  Y
Sbjct:  430 DEPDVQVGINIIVKALEEPVRQIAANAGLEGSVIIEKIIN-SEKGIGFDALHEKYVDMLSVGIVDPTKVTRSALQNAASVASTFLTTECAVADIPEKDKPEMPGGAPGMGMGGMY 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_BEUC1 (60 kDa chaperonin OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=groL PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 53/112 (47.32%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  361 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSR-ANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYGY 693
            +E  G +IVK A+  PLK IA N G+ G VV+EKV S  A H  G NAATG+YEDL+AAGI DP KV R  L++A+S A  FL ++    +  E   A  GG      G G+
Sbjct:  433 DESTGGNIVKVAIDAPLKQIAINAGLEGGVVAEKVRSLPAGH--GLNAATGDYEDLLAAGINDPVKVTRSALQNAASIAGLFLTTEAIVADKPEKASAPAGGGDGDMGGMGF 542          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_BDEBA (60 kDa chaperonin OS=Bdellovibrio bacteriovorus GN=groL PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 44/113 (38.94%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE---PAMPGGNPMANSG 699
            ++EE+ GA I+KRA   P++ IA N G++G++V +++L   +  +G NA +  Y DL+  G+IDP KVVRC L +A+S +   L ++    E  + E   PAMPG + M   G
Sbjct:  431 SEEEQFGATIIKRACEEPIRQIAANAGLDGAIVLDRILQNKSTTWGFNAYSDEYTDLIKDGVIDPVKVVRCALTNAASVSSLMLTTETMIAEAPKKESAAPAMPGHDGMGGMG 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_AGRT5 (60 kDa chaperonin OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=groL PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  391 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE---PAMPGG 699
            ND+++ G +IV++AL   ++ IA+N G   S+V  K+L +    YG NA TG Y DL+A GI+DP KVVR  L++A+S A   + ++    E+ + E   P MPGG
Sbjct:  432 NDDQEAGINIVRKALQSLVRQIAENAGDEASIVVGKILDKNEDNYGYNAQTGEYGDLIALGIVDPVKVVRTALQNAASVASLLITTEAMIAELPKKESAMPQMPGG 537          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 44/102 (43.14%), Postives = 66/102 (64.71%), Query Frame = -1
Query:  400 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAM 705
            L++ +E++GADIV++AL  P  LIA+N G+ G VV EK+      + G NA T  YE+L+ +G+IDP KV RC L++A+S A   L +    VE  +P+ A+
Sbjct:  478 LEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKI-KNGEWEVGYNAMTDTYENLVESGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAAV 578          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 44/102 (43.14%), Postives = 67/102 (65.69%), Query Frame = -1
Query:  397 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMP 702
            ++ +E++GADIV++AL  P  LIA+N GV G VV EK++  ++ + G NA T  YE+L  AG+IDP KV RC L++A+S A   L +    + + +P+P  P
Sbjct:  478 EDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMF-SDWENGYNAMTDTYENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQ--AIVVDKPKPKAP 576          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_THELT (60 kDa chaperonin OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=groL PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 50/107 (46.73%), Postives = 66/107 (61.68%), Query Frame = -1
Query:  397 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGV----EIKEPEPAMP 705
            LD DE KVGA IV +AL  P++ IA+N G +G+V+ EK+L+     YG +A  G Y D+  AGIIDP KV R  L++A+S A   L ++   V    E KE  PAMP
Sbjct:  431 LDGDE-KVGAMIVYKALEAPIRQIAENAGYDGAVIIEKILASKEESYGFDALKGEYTDMFKAGIIDPAKVTRSALQNAASIAGMLLTTEVLVVEKPEEKKEAAPAMP 536          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_RHOS1 (60 kDa chaperonin OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=groL PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = -1
Query:  385 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNP 702
            +N ++  G  IV+RAL  PL+ IA+N GV+GSVV+ KV       +G NA T  Y D+   G+IDP KVVR  LE A+S A   + ++   +   +PEP  P G P
Sbjct:  432 ENPDQNAGITIVRRALEAPLRQIAQNAGVDGSVVAGKVRESNEKSFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVASLLITTE--AMIADKPEPKSPAGGP 535          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_PORG3 (60 kDa chaperonin OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=groL PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 47/107 (43.93%), Postives = 65/107 (60.75%), Query Frame = -1
Query:  391 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE---PAMPGG 702
            +N++E  G +IVKRA+  PL+ I  N G  G+VV +KV       +G NA T  +E+L + G+IDP KV R  LE+A+S A  FL ++C   + KE     PAMPGG
Sbjct:  432 ENEDETTGIEIVKRAIEEPLRQIVANAGKEGAVVVQKV-KEGKDDFGYNARTDVFENLYSTGVIDPAKVTRVALENAASIAGMFLTTECVIADKKEDNPAAPAMPGG 537          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CUPTR (60 kDa chaperonin OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=groL PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = -1
Query:  391 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI--KEPEPAMPGG 702
            DN ++  G  IV RA+  PL+ I  N G   SVV  KV+    + YG NAA+G Y DL+  G++DP KV R  L++A+S A   L +DC   E   +E  PAMPGG
Sbjct:  432 DNADQNAGIKIVLRAMEEPLRQIVLNAGEEASVVVAKVIEGKGN-YGYNAASGEYGDLVEMGVLDPTKVTRTALQNAASVASLMLTTDCAVAETPKEESAPAMPGG 536          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CLOAB2.580e-1539.1360 kDa chaperonin OS=Clostridium acetobutylicum GN... [more]
CH60_BEUC12.580e-1547.3260 kDa chaperonin OS=Beutenbergia cavernae (strain... [more]
CH60_BDEBA2.580e-1538.9460 kDa chaperonin OS=Bdellovibrio bacteriovorus GN... [more]
CH60_AGRT52.580e-1541.5160 kDa chaperonin OS=Agrobacterium tumefaciens (st... [more]
RUBA_PEA3.369e-1543.14RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_ARATH3.369e-1543.14RuBisCO large subunit-binding protein subunit alph... [more]
CH60_THELT3.369e-1546.7360 kDa chaperonin OS=Thermotoga lettingae (strain ... [more]
CH60_RHOS13.369e-1542.4560 kDa chaperonin OS=Rhodobacter sphaeroides (stra... [more]
CH60_PORG33.369e-1543.9360 kDa chaperonin OS=Porphyromonas gingivalis (str... [more]
CH60_CUPTR3.369e-1544.3460 kDa chaperonin OS=Cupriavidus taiwanensis (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
back to top