CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_RHOS4 (60 kDa chaperonin 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=groL1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = -1
Query:  385 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNP 702
            +N ++  G  IV+RAL  PL+ IA+N GV+GSVV+ KV       +G NA T  Y D+   G+IDP KVVR  LE A+S A   + ++   +   +PEP  P G P
Sbjct:  432 ENPDQNAGITIVRRALEAPLRQIAQNAGVDGSVVAGKVRESNEKSFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVASLLITTE--AMIADKPEPKSPAGGP 535          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_RHOPB (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisB18) GN=groL1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 42/112 (37.50%), Postives = 68/112 (60.71%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 699
            ND++K G +IV++AL +P + IA N G +GSV+  K+L +  + YG ++ +G Y D++  GIIDP KVVR  +++A+S A   + ++    E+ +   A  GG P    G G
Sbjct:  433 NDDQKTGVEIVRKALSWPARQIAINAGEDGSVIVGKILEKDQYSYGFDSQSGEYGDMVKKGIIDPTKVVRAAIQNAASVAALLITTEAMIAELPKKGNA-GGGMPPGGGGMG 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_PROMT (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL2A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 46/104 (44.23%), Postives = 67/104 (64.42%), Query Frame = -1
Query:  382 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPM 693
            EE +GA+IV+ AL  PL  IA+N G NG+VV+E V S+  +  G NAATG Y D+++AGI+DP KV R  L++A+S A   L ++C   ++ E + +   G  M
Sbjct:  435 EELIGANIVEAALTSPLMRIAENAGANGAVVAENVKSKPVND-GYNAATGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDSSSAGGGM 537          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_CHLCV (60 kDa chaperonin 1 OS=Chlamydophila caviae GN=groL1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = -1
Query:  394 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE----PAMPG 705
            L N++E++GA IV +AL  PLK IA N G  G+++ ++VLSR++ + G +A    Y D++ AGI+DP KV RC LE A+S A   L ++    +I E +    PAMPG
Sbjct:  433 LTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIICQQVLSRSSSE-GYDALRDAYTDMIEAGILDPTKVTRCALESAASVAGLLLTTEALIADIPEEKSSSAPAMPG 539          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_BRASO (60 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ORS278) GN=groL1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 38/87 (43.68%), Postives = 61/87 (70.11%), Query Frame = -1
Query:  439 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSD 699
            N ++K G DI++RA+  P++ I +N G +GS+V  K+L + ++ +G NAATG Y+DL+ AG+IDP KVVR  L+ A+S A   + ++
Sbjct:  433 NADQKAGVDIIRRAIQVPVRQIVQNAGDDGSLVVGKLLEKDSYSWGFNAATGEYQDLVQAGVIDPAKVVRTALQDAASVASLLITTE 519          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_RHOCS (60 kDa chaperonin OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=groL PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15
Identity = 43/112 (38.39%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 699
            N+++K G DIV++AL  P++ IA+N G +GSV+  K+L +    +G NA  G Y D+   G+IDP KVVR  L+ A+S A   + ++   +  ++PE   P G P    G G
Sbjct:  433 NEDQKFGIDIVRKALQAPVRQIAQNAGFDGSVIVGKLLEKGETNFGFNAQAGEYGDMFKFGVIDPTKVVRAALQDAASVAGLLITTE--AMIGEKPEKKAPAGAPGGMGGMG 542          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_PORGI (60 kDa chaperonin OS=Porphyromonas gingivalis GN=groL PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = -1
Query:  391 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE---PAMPGG 702
            +N++E  G +IVKRA+  PL+ I  N G  G+VV +KV       +G NA T  +E+L   G+IDP KV R  LE+A+S A  FL ++C   + KE     PAMPGG
Sbjct:  432 ENEDETTGIEIVKRAIEEPLRQIVANAGKEGAVVVQKV-KEGKDDFGYNARTDVFENLYTTGVIDPAKVTRVALENAASIAGMFLTTECVIADKKEDNPAAPAMPGG 537          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_NEIMF (60 kDa chaperonin OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=groL PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15
Identity = 47/110 (42.73%), Postives = 61/110 (55.45%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 699
            N ++  G  IV RA+  PL+ I  N G   SVV  KVL    + YG NA +G Y D++  G++DP KV R  L+HA+S A   L +DC   EI E +PAMP    M   G
Sbjct:  433 NADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLEGKGN-YGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPEDKPAMPDMGGMGGMG 541          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_NEIMA (60 kDa chaperonin OS=Neisseria meningitidis serogroup A GN=groL PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15
Identity = 47/110 (42.73%), Postives = 61/110 (55.45%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 699
            N ++  G  IV RA+  PL+ I  N G   SVV  KVL    + YG NA +G Y D++  G++DP KV R  L+HA+S A   L +DC   EI E +PAMP    M   G
Sbjct:  433 NADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLEGKGN-YGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPEDKPAMPDMGGMGGMG 541          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_METB6 (60 kDa chaperonin OS=Methanoregula boonei (strain 6A8) GN=groL PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = -1
Query:  439 DEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSD 696
            D+ +VG  IVKRAL  P++ IAKN G+ G+ V  K+    N  YG NA TG YEDLM  G+IDP KVVR  L++A S A   L ++
Sbjct:  433 DDRRVGVSIVKRALEEPIRQIAKNSGIEGAEVIAKIREHKNKHYGYNAKTGIYEDLMENGVIDPAKVVRIGLQNAGSIAGLILSTE 518          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_RHOS43.369e-1542.4560 kDa chaperonin 1 OS=Rhodobacter sphaeroides (st... [more]
CH601_RHOPB3.369e-1537.5060 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH601_PROMT3.369e-1544.2360 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH601_CHLCV3.369e-1543.5260 kDa chaperonin 1 OS=Chlamydophila caviae GN=gro... [more]
CH601_BRASO3.369e-1543.6860 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ... [more]
CH60_RHOCS4.400e-1538.3960 kDa chaperonin OS=Rhodospirillum centenum (stra... [more]
CH60_PORGI4.400e-1543.9360 kDa chaperonin OS=Porphyromonas gingivalis GN=g... [more]
CH60_NEIMF4.400e-1542.7360 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_NEIMA4.400e-1542.7360 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_METB64.400e-1550.0060 kDa chaperonin OS=Methanoregula boonei (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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