CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_THESQ (60 kDa chaperonin OS=Thermotoga sp. (strain RQ2) GN=groL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  397 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMP 693
            +EK+GA IV +AL  P+K IA+N G +G+V+ EK+LS  +  YG +A  G Y ++   GIIDP KV R  L++A+S A   L ++   VE  E +   P
Sbjct:  434 DEKIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDPAYGFDALRGEYCNMFERGIIDPAKVTRSALQNAASIAGMLLTTEVLIVEKPEEKKETP 532          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_THEP1 (60 kDa chaperonin OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=groL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  397 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMP 693
            +EK+GA IV +AL  P+K IA+N G +G+V+ EK+LS  +  YG +A  G Y ++   GIIDP KV R  L++A+S A   L ++   VE  E +   P
Sbjct:  434 DEKIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDPAYGFDALRGEYCNMFERGIIDPAKVTRSALQNAASIAGMLLTTEVLIVEKPEEKKETP 532          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_NITOC (60 kDa chaperonin OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=groL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 42/112 (37.50%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 699
            N ++ VG +I +RA+  PL+ I  N G   SV+  ++     + YG NAATG + D++A GI+DP KV R  L++A+S A   + ++    E  + E A PGG P    G G
Sbjct:  433 NHDQDVGINIARRAMEEPLRQIVNNSGEEASVIVNQIKGGEGN-YGYNAATGEFGDMIAMGILDPTKVSRTALQNAASVAGLMITTEAMIAEAPKDEEASPGGAPGMGGGMG 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_MARMM (60 kDa chaperonin OS=Maricaulis maris (strain MCS10) GN=groL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = -1
Query:  370 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 702
            DN ++  G  IV RAL  P++ IA N GV GS+V  KV+   +  +G NA T  Y D++A G+IDP KVVR  L+ A+S A   + ++    +  + E A  G   M   G
Sbjct:  432 DNADQTQGIAIVARALQSPIRQIATNSGVEGSIVVGKVMENPSATFGFNAQTEEYGDMLAFGVIDPAKVVRTALQDAASVASLLITTEAAVADAPKEEGAGGGMPDMGGMG 542          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_MAGSA (60 kDa chaperonin OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=groL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 45/113 (39.82%), Postives = 68/113 (60.18%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVE-IKEPEPAMPGGNPMANSGYG 699
            N +++VG  IV+RAL  P++ IA+N G +G+VV+ K+    +  +G +A TG Y D++ AGIIDP KVVR  L+ A+S A   + ++    E  K+    MPGG+     G G
Sbjct:  433 NADQEVGISIVRRALQAPVRQIAENAGHDGAVVAGKIGESKDLSFGFDAQTGIYTDMIKAGIIDPTKVVRTALQDAASVAGLLITTEAMIAERPKKDAGGMPGGDMGGMGGMG 545          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_HELPS (60 kDa chaperonin OS=Helicobacter pylori (strain Shi470) GN=groL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 47/112 (41.96%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE--PAMPGGNPMANSG 699
            +D+EKVG +I+ RA+  PL  IA N G +G VV  +V     H +G NA+ G Y D+   GIIDP KV R  L++A S +   L ++    EIKE +  PAMP    M   G
Sbjct:  430 HDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNEVQKHEGH-FGFNASNGKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKATPAMPDMGGMGGMG 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_HELPJ (60 kDa chaperonin OS=Helicobacter pylori J99 GN=groL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 47/112 (41.96%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE--PAMPGGNPMANSG 699
            +D+EKVG +I+ RA+  PL  IA N G +G VV  +V     H +G NA+ G Y D+   GIIDP KV R  L++A S +   L ++    EIKE +  PAMP    M   G
Sbjct:  430 HDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNEVQKHEGH-FGFNASNGKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKAAPAMPDMGGMGGMG 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_BURPP (60 kDa chaperonin OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=groL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 699
            N ++  G  IV RA+  PL+ I  N G   SVV   V +   + YG NAATG Y DL+ AG++DP KV R  L++A+S A   L +D    E+ + +  M GG P    G G
Sbjct:  433 NADQDAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGQGN-YGYNAATGEYVDLVDAGVVDPTKVTRTALQNAASVAGLLLTTDAAVCELPKEDAPMAGGMPGGMGGMG 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_BORPA (60 kDa chaperonin OS=Bordetella parapertussis GN=groL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = -1
Query:  391 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE----PAMPGG 702
            D  ++  G  ++ RA+  PL+ I  N G   SVV   VL+   + YG NAATG Y DL+  G++DP KV R  L++A+S A   L ++   VE+ E +    PAMPGG
Sbjct:  432 DTADQNAGIKLILRAVEEPLRTIVTNAGDEASVVVNTVLNGKGN-YGYNAATGEYGDLVEQGVLDPTKVTRTALQNAASVASLLLTAEAAVVELMEDKPAAAPAMPGG 538          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_BORBR (60 kDa chaperonin OS=Bordetella bronchiseptica GN=groL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = -1
Query:  391 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE----PAMPGG 702
            D  ++  G  ++ RA+  PL+ I  N G   SVV   VL+   + YG NAATG Y DL+  G++DP KV R  L++A+S A   L ++   VE+ E +    PAMPGG
Sbjct:  432 DTADQNAGIKLILRAVEEPLRTIVTNAGDEASVVVNTVLNGKGN-YGYNAATGEYGDLVEQGVLDPTKVTRTALQNAASVASLLLTAEAAVVELMEDKPAAAPAMPGG 538          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_THESQ1.849e-1342.4260 kDa chaperonin OS=Thermotoga sp. (strain RQ2) G... [more]
CH60_THEP11.849e-1342.4260 kDa chaperonin OS=Thermotoga petrophila (strain... [more]
CH60_NITOC1.849e-1337.5060 kDa chaperonin OS=Nitrosococcus oceani (strain ... [more]
CH60_MARMM1.849e-1338.7460 kDa chaperonin OS=Maricaulis maris (strain MCS1... [more]
CH60_MAGSA1.849e-1339.8260 kDa chaperonin OS=Magnetospirillum magneticum (... [more]
CH60_HELPS1.849e-1341.9660 kDa chaperonin OS=Helicobacter pylori (strain S... [more]
CH60_HELPJ1.849e-1341.9660 kDa chaperonin OS=Helicobacter pylori J99 GN=gr... [more]
CH60_BURPP1.849e-1340.1860 kDa chaperonin OS=Burkholderia phytofirmans (st... [more]
CH60_BORPA1.849e-1340.7460 kDa chaperonin OS=Bordetella parapertussis GN=g... [more]
CH60_BORBR1.849e-1340.7460 kDa chaperonin OS=Bordetella bronchiseptica GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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