CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_BLOFL (60 kDa chaperonin OS=Blochmannia floridanus GN=groL PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 43/114 (37.72%), Postives = 66/114 (57.89%), Query Frame = -1
Query:  364 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGGNPMANSGYG 702
            DN+++ VG  + +RA+  PL+ I  N G   SV++  V S   +  G NAAT  Y +++  GI+DP KV R  L++A+S A   + ++C   E+ KE +P + GGNP    G G
Sbjct:  432 DNEDQNVGIKVARRAMEAPLRQIMANAGEEPSVIANNVRSGEGNT-GYNAATEKYGNMIELGILDPTKVTRSALQYAASIAGLMITTECMVTELPKEDKPDLGGGNPGGAGGMG 544          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_SALTO (60 kDa chaperonin 2 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=groL2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 51/116 (43.97%), Postives = 71/116 (61.21%), Query Frame = -1
Query:  361 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVE-IKEPEPAMPGGNPMANSGYGY 705
            LD DE KVG  IV++AL  PL+ IA+N G +G VV +KV+ + +  +G +AATG Y DL  AGI+DP KV R  + +A+S A   L ++   V+  +EPEPA  G       G G+
Sbjct:  430 LDGDE-KVGVSIVRKALVEPLRWIAQNAGHDGYVVVQKVVDK-DWGHGLDAATGEYVDLAKAGILDPVKVTRNAVANAASIAGLLLTTESLVVDKPQEPEPAAGGHGHGHQHGPGF 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_ROSCS (60 kDa chaperonin 2 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=groL2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 48/110 (43.64%), Postives = 65/110 (59.09%), Query Frame = -1
Query:  397 DEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLS----RANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE------PAMP 696
            +EE++  ++++RAL  PL+ +A N G +GSVV  +V +      N  YG +  TGNY DLM AGIIDP KVVR  LE+A S A   L +D    E  EP+      P+MP
Sbjct:  433 EEERMALNVLRRALEEPLRQLAINAGEDGSVVVNQVRTLQREHNNPHYGFDVMTGNYVDLMQAGIIDPAKVVRSALENAVSVAGIVLTTDALITEAPEPKKNGARTPSMP 542          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_MYCA1 (60 kDa chaperonin 2 OS=Mycobacterium avium (strain 104) GN=groL2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 49/108 (45.37%), Postives = 64/108 (59.26%), Query Frame = -1
Query:  370 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 693
            +E  GA+IV+ AL  PLK IA N G+   VV+EKV +      G NAATG YEDL+ AG+ DP KV R  L++A+S A  FL ++   V  K  + A P G+P    G
Sbjct:  432 DEATGANIVRVALEAPLKQIAFNGGLEPGVVAEKVRNSPAGT-GLNAATGEYEDLLKAGVADPVKVTRSALQNAASIAGLFLTTE-AVVADKPEKAAAPAGDPTGGMG 537          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_FRASC (60 kDa chaperonin 2 OS=Frankia sp. (strain CcI3) GN=groL2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  361 DEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYGY 696
            ++E+ GA++V+RAL  PL+ IA N G+ G VV EKV +     +G +AATG + +++ AGIIDP KV R  L++A+S A  FL ++   V  ++PE       P    G  Y
Sbjct:  433 EDERTGAEMVRRALTEPLRQIAVNAGLEGGVVVEKVRN-LQPGWGLDAATGEHVNMLEAGIIDPTKVTRSALQNAASIAGLFLTTE--AVVAEKPEEKETAAAPAGGGGLEY 541          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_ARTS2 (60 kDa chaperonin 1 OS=Arthrobacter sp. (strain FB24) GN=groL1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 53/112 (47.32%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  370 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSR-ANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE---PAMPGGNPMANSG 693
            +E  GA+IV+ A+  PLK IA N G+   VV +KV    A H  G NAATG Y DL+AAGI DP KV R  L++A+S A  FL ++   V   +PE   PAM GG+ M   G
Sbjct:  433 DEATGANIVRVAIDAPLKQIAFNAGLEPGVVVDKVRGLPAGH--GLNAATGQYVDLLAAGINDPVKVTRSALQNAASIAGLFLTTE--AVVADKPEKNAPAMGGGDDMGGMG 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH61_MAIZE (Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = -1
Query:  391 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI---KEPEPAMPGG 699
            N ++K+G  I++ AL  P+  IA N GV G+VV  K+L + N   G +AA G Y D++  GIIDP KV+R  L  A+S +     ++   VEI   + P PAM GG
Sbjct:  466 NFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQENTDLGYDAAKGEYVDMVKTGIIDPLKVIRTALVDAASVSSLMTTTESIIVEIPKEEAPAPAMGGG 571          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_THEEB (60 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = -1
Query:  370 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 693
            EE +GA+IV+RAL  PL+ IA+N G NG+++ E+V  +     G +AA   Y ++  AGI+DP KV R  L++A+S A   L ++C  V+  EP+   P G+     G
Sbjct:  435 EELIGANIVERALSAPLRRIAENAGQNGAIIVERVKEKP-FDVGYDAAKDEYVNMFDAGIVDPAKVTRSALQNAASIAGMVLTTECIIVDKPEPKENNPAGSGAGMGG 541          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_THEAB (60 kDa chaperonin OS=Thermosipho africanus (strain TCF52B) GN=groL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = -1
Query:  397 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMP 705
            LD DE K+GA IV  AL  P+  IAKN G +G+++  KVL   +  YG +A  G Y ++   GIIDP KV R  L++A+S A   L ++   VE  EP+   P
Sbjct:  431 LDGDE-KIGAKIVYEALIAPINQIAKNAGYDGAIIIHKVLENDDPAYGFDALKGEYCNMFERGIIDPAKVTRSALQNAASIASMLLTTEALVVEKPEPKNNAP 532          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_PELTS (60 kDa chaperonin OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=groL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = -1
Query:  391 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGG 693
            +EK G DIV+RAL  PL+ IA N G+ GSV+ EKV   A+   G NA TG + +++ AGI+DP KV R  L++A+S A   L ++    E  E E    GG
Sbjct:  434 DEKTGIDIVRRALEEPLRQIASNAGLEGSVIVEKV-KNADPGIGFNALTGEFVNMIDAGIVDPAKVTRTALQNAASIAAMILTTETLVAEKPEKEKDTMGG 533          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BLOFL1.849e-1337.7260 kDa chaperonin OS=Blochmannia floridanus GN=gro... [more]
CH602_SALTO1.849e-1343.9760 kDa chaperonin 2 OS=Salinispora tropica (strain... [more]
CH602_ROSCS1.849e-1343.6460 kDa chaperonin 2 OS=Roseiflexus castenholzii (s... [more]
CH602_MYCA11.849e-1345.3760 kDa chaperonin 2 OS=Mycobacterium avium (strain... [more]
CH602_FRASC1.849e-1340.1860 kDa chaperonin 2 OS=Frankia sp. (strain CcI3) G... [more]
CH601_ARTS21.849e-1347.3260 kDa chaperonin 1 OS=Arthrobacter sp. (strain FB... [more]
CH61_MAIZE2.414e-1341.51Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=C... [more]
CH60_THEEB2.414e-1339.8160 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH60_THEAB2.414e-1342.7260 kDa chaperonin OS=Thermosipho africanus (strain... [more]
CH60_PELTS2.414e-1344.5560 kDa chaperonin OS=Pelotomaculum thermopropionic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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