CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_JANSC (60 kDa chaperonin OS=Jannaschia sp. (strain CCS1) GN=groL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = -1
Query:  364 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 702
            +N ++  G  IV+RAL  PL+ IA+N GV+GSVV+ K+    ++ +G NA T  Y DL   G+IDP KVVR  L+ A+S A   + ++    +    E A  GG      G G
Sbjct:  431 ENADQNAGIAIVRRALEAPLRQIAENSGVDGSVVAGKIRESDDNAFGFNAQTEEYGDLFKFGVIDPAKVVRTALQDAASVAGLLITTEAMVADKPAKEGAPAGGGMPDMGGMG 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_HELPY (60 kDa chaperonin OS=Helicobacter pylori GN=groL PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 47/112 (41.96%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE--PAMPGGNPMANSG 699
            +D+EKVG +I+ RA+  PL  IA N G +G VV  +V     H +G NA+ G Y D+   GIIDP KV R  L++A S +   L ++    EIKE +  PAMP    M   G
Sbjct:  430 HDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNEVEKHEGH-FGFNASNGKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKAAPAMPDMGGMGGMG 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_HELPH (60 kDa chaperonin OS=Helicobacter pylori (strain HPAG1) GN=groL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 47/112 (41.96%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE--PAMPGGNPMANSG 699
            +D+EKVG +I+ RA+  PL  IA N G +G VV  +V     H +G NA+ G Y D+   GIIDP KV R  L++A S +   L ++    EIKE +  PAMP    M   G
Sbjct:  430 HDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNEVEKHEGH-FGFNASNGKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKAAPAMPDMGGMGGMG 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_HELPG (60 kDa chaperonin OS=Helicobacter pylori (strain G27) GN=groL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 47/112 (41.96%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE--PAMPGGNPMANSG 699
            +D+EKVG +I+ RA+  PL  IA N G +G VV  +V     H +G NA+ G Y D+   GIIDP KV R  L++A S +   L ++    EIKE +  PAMP    M   G
Sbjct:  430 HDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNEVEKHEGH-FGFNASNGKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKAAPAMPDMGGMGGMG 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_HELP2 (60 kDa chaperonin OS=Helicobacter pylori (strain P12) GN=groL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 47/112 (41.96%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE--PAMPGGNPMANSG 699
            +D+EKVG +I+ RA+  PL  IA N G +G VV  +V     H +G NA+ G Y D+   GIIDP KV R  L++A S +   L ++    EIKE +  PAMP    M   G
Sbjct:  430 HDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNEVEKHEGH-FGFNASNGKYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKATPAMPDMGGMGGMG 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_GRAFK (60 kDa chaperonin OS=Gramella forsetii (strain KT0803) GN=groL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 46/111 (41.44%), Postives = 62/111 (55.86%), Query Frame = -1
Query:  370 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 702
            +N +E  G  IV +A+  PL+ I +N G  GSVV  KVL      +G +A T  Y D++ AGIIDP KV R  LE+A+S A   L ++C   +I E + A  GG P    G
Sbjct:  432 ENPDEATGVKIVSKAIESPLRTIVENAGGEGSVVINKVLE-GKKDFGYDAKTETYVDMLKAGIIDPKKVTRVALENAASVAGMILTTECALTDIPE-DNAGGGGMPQGMGG 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_FRATT (60 kDa chaperonin OS=Francisella tularensis subsp. tularensis GN=groL PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = -1
Query:  382 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPM 702
            +ND++  G  ++++A+  PL+ I  N G   SVV  +V +   + YG NAA   Y D++  GI+DP KV R  L+HA+S A   + ++    EIKE  PAMP G  M
Sbjct:  432 ENDDQNYGIALLRKAIEAPLRQIVSNAGGESSVVVNQVKANQGN-YGYNAANDTYGDMVEMGILDPTKVTRSALQHAASIAGLMITTEAMIGEIKEAAPAMPMGGGM 537          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_FRAT1 (60 kDa chaperonin OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=groL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = -1
Query:  382 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPM 702
            +ND++  G  ++++A+  PL+ I  N G   SVV  +V +   + YG NAA   Y D++  GI+DP KV R  L+HA+S A   + ++    EIKE  PAMP G  M
Sbjct:  432 ENDDQNYGIALLRKAIEAPLRQIVSNAGGESSVVVNQVKANQGN-YGYNAANDTYGDMVEMGILDPTKVTRSALQHAASIAGLMITTEAMIGEIKEAAPAMPMGGGM 537          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CAMLR (60 kDa chaperonin OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=groL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 45/108 (41.67%), Postives = 62/108 (57.41%), Query Frame = -1
Query:  370 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 693
            +E +GA IV+RAL  PL+ IA+N G +  VV   V +      G +AA G Y +++ +GIIDP KV R  L +A S A   L ++    EIKE +PAMP  + M   G
Sbjct:  432 DEAIGAAIVERALRAPLRQIAENAGFDAGVVVNTVENSKEENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSVASMLLTTEATISEIKEDKPAMPDMSGMGGMG 539          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_BORPE (60 kDa chaperonin OS=Bordetella pertussis GN=groL PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = -1
Query:  391 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE----PAMPGG 702
            D  ++  G  ++ RA+  PL+ I  N G   SVV   VL+   + YG NAATG Y DL+  G++DP KV R  L++A+S A   L ++   VE+ E +    PAMPGG
Sbjct:  432 DTADQNAGIKLILRAVEEPLRTIVTNAGDEASVVVNTVLNGKGN-YGYNAATGEYGDLVEQGVLDPTKVTRTALQNAASVASLLLTAEAAVVELMENKPAAAPAMPGG 538          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_JANSC2.414e-1338.9460 kDa chaperonin OS=Jannaschia sp. (strain CCS1) ... [more]
CH60_HELPY2.414e-1341.9660 kDa chaperonin OS=Helicobacter pylori GN=groL P... [more]
CH60_HELPH2.414e-1341.9660 kDa chaperonin OS=Helicobacter pylori (strain H... [more]
CH60_HELPG2.414e-1341.9660 kDa chaperonin OS=Helicobacter pylori (strain G... [more]
CH60_HELP22.414e-1341.9660 kDa chaperonin OS=Helicobacter pylori (strain P... [more]
CH60_GRAFK2.414e-1341.4460 kDa chaperonin OS=Gramella forsetii (strain KT0... [more]
CH60_FRATT2.414e-1339.2560 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FRAT12.414e-1339.2560 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_CAMLR2.414e-1341.6760 kDa chaperonin OS=Campylobacter lari (strain RM... [more]
CH60_BORPE2.414e-1340.7460 kDa chaperonin OS=Bordetella pertussis GN=groL ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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