CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:165..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_THEVL (60 kDa chaperonin 1 OS=Thermosynechococcus vulcanus GN=groL1 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = -1
Query:  370 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 693
            EE +GA+IV+RAL  PL+ IA+N G NG+++ E+V  +     G +AA   Y ++  AGI+DP KV R  L++A+S A   L ++C  V+  EP+   P G+     G
Sbjct:  435 EELIGANIVERALSAPLRRIAENAGQNGAIIVERVKEKP-FDVGYDAAKDEYVNMFDAGIVDPAKVTRSALQNAASIAGMVLTTECIIVDKPEPKENNPAGSGAGMGG 541          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_METCA (60 kDa chaperonin 1 OS=Methylococcus capsulatus GN=groL1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = -1
Query:  391 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGG 699
            N ++ VG  I +RA+  PL+ I  N G   SVV  KV   A + +G NAATG Y D++A GI+DP KV R  L++A+S A   + ++    E  + E  MPGG
Sbjct:  433 NHDQDVGISIARRAMEEPLRQIVANAGDEPSVVLNKVAEGAGN-FGYNAATGEYGDMVAMGILDPAKVTRSALQNAASVASLMITTEAMVAEEPKEEAPMPGG 534          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_FRASC (60 kDa chaperonin 1 OS=Frankia sp. (strain CcI3) GN=groL1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 51/119 (42.86%), Postives = 71/119 (59.66%), Query Frame = -1
Query:  337 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYGY*AN*QGPG 693
            +E  G  IV+RAL  PL  IA+N G+ G+V+  KV      + G NAATG Y DL+AAG+IDP KV R  + +A+S A   + ++ G V  K  EPA   G+     G+G+ ++ QGPG
Sbjct:  433 DELAGVRIVRRALDAPLSWIARNAGLEGAVIVSKVKELEPGR-GYNAATGEYTDLIAAGVIDPVKVTRSAVANAASIAALLITTE-GLVVEKPAEPAPQDGH---GHGHGH-SHPQGPG 545          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_THEPX (60 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = -1
Query:  379 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMA 705
            LD D  K GA IV RAL  P++ IA N GV+GSV+ EK+ +  +  +G +A    + D+  AGI+DP KV R  L++A+S A   L ++   V++ E   AMP  NP A
Sbjct:  431 LDGDF-KTGAKIVLRALEEPVRQIAANAGVDGSVIVEKIKAAKDPNFGYDAYKEEFTDMFKAGIVDPTKVTRTALQNAASIASMILTTEAVVVDVPEKNTAMP--NPGA 536          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_THEP3 (60 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = -1
Query:  379 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMA 705
            LD D  K GA IV RAL  P++ IA N GV+GSV+ EK+ +  +  +G +A    + D+  AGI+DP KV R  L++A+S A   L ++   V++ E   AMP  NP A
Sbjct:  431 LDGDF-KTGAKIVLRALEEPVRQIAANAGVDGSVIVEKIKAAKDPNFGYDAYKEEFTDMFKAGIVDPTKVTRTALQNAASIASMILTTEAVVVDVPEKNTAMP--NPGA 536          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_SILPO (60 kDa chaperonin OS=Silicibacter pomeroyi GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 42/110 (38.18%), Postives = 64/110 (58.18%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 699
            N ++  G +IV++A+  PL+ IA+N GV+G+VV+ KV    +  +G NA T  Y D+   G+IDP KVVR  LE ASS A   + ++   +   +P+   P G  M + G
Sbjct:  433 NADQTAGINIVRKAIEAPLRQIAENAGVDGAVVAGKVRESGDASFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDASSVAGLLITTE--AMVADKPQKDAPAGGGMPDMG 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_HELAH (60 kDa chaperonin OS=Helicobacter acinonychis (strain Sheeba) GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 47/112 (41.96%), Postives = 62/112 (55.36%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE--PAMPGGNPMANSG 699
            N +EKVG +I+ RA+  PL  IA N G +G VV  +V     H +G NA+ G Y D+   GIIDP KV R  L++A S +   L ++    EIKE +  PAMP    M   G
Sbjct:  430 NGDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNEVQKHEGH-FGFNASNGEYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKATPAMPDMGGMGGMG 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_FRATN (60 kDa chaperonin OS=Francisella tularensis subsp. novicida (strain U112) GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = -1
Query:  382 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPM 702
            +ND++  G  ++++A+  PL+ I  N G   SVV  +V +   + YG NAA   Y D++  GI+DP KV R  L+HA+S A   + ++    EIKE  PAMP G  M
Sbjct:  432 ENDDQNHGIALLRKAIEAPLRQIVSNAGGESSVVVNQVKANQGN-YGYNAANDTYGDMVEMGILDPTKVTRSALQHAASIAGLMITTEAMVGEIKEAAPAMPMGGGM 537          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_DINSH (60 kDa chaperonin OS=Dinoroseobacter shibae (strain DFL 12) GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 699
            N+++ +G +IV++AL  PL+ IA+N GV+GSVV+ K+   ++  +G NA T  Y D+   G+IDP KVVR  L+ A+S A   + ++    +    E A  GG      G G
Sbjct:  433 NNDQNIGINIVRKALEAPLRQIAENAGVDGSVVAGKIRESSDLAFGFNAQTEEYGDMFKFGVIDPAKVVRTALQDAASIAGLLITTEAMVADKPAKEGAGAGGGMPDMGGMG 544          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_DICT6 (60 kDa chaperonin OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 40/99 (40.40%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  409 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE 705
            +DN++E++G +IV+R+L  PLKLIA N G  GS+++EKV    +   G +AA   + ++  AGI+DP KV R  L++A+S A   L ++  G+  ++PE
Sbjct:  431 VDNEDERIGVEIVRRSLDVPLKLIANNAGKEGSIIAEKV-KEMDGPMGYDAANDRFVNMFEAGIVDPAKVTRSALQNAASIAALVLTTE--GLVAEKPE 526          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_THEVL2.414e-1339.8160 kDa chaperonin 1 OS=Thermosynechococcus vulcanu... [more]
CH601_METCA2.414e-1341.7560 kDa chaperonin 1 OS=Methylococcus capsulatus GN... [more]
CH601_FRASC2.414e-1342.8660 kDa chaperonin 1 OS=Frankia sp. (strain CcI3) G... [more]
CH60_THEPX3.153e-1342.2060 kDa chaperonin OS=Thermoanaerobacter sp. (strai... [more]
CH60_THEP33.153e-1342.2060 kDa chaperonin OS=Thermoanaerobacter pseudethan... [more]
CH60_SILPO3.153e-1338.1860 kDa chaperonin OS=Silicibacter pomeroyi GN=groL... [more]
CH60_HELAH3.153e-1341.9660 kDa chaperonin OS=Helicobacter acinonychis (str... [more]
CH60_FRATN3.153e-1339.2560 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_DINSH3.153e-1337.5060 kDa chaperonin OS=Dinoroseobacter shibae (strai... [more]
CH60_DICT63.153e-1340.4060 kDa chaperonin OS=Dictyoglomus thermophilum (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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