CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_DEIRA (60 kDa chaperonin OS=Deinococcus radiodurans GN=groL PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 49/113 (43.36%), Postives = 65/113 (57.52%), Query Frame = -1
Query:  370 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNY-EDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE---PAMP-GGNPMANSG 693
            +E  GA I+ RAL  P + IA N G  GSV+   V+     +YG NAATG Y ED++AAGI+DP KV R  L++A+S     L ++   +   +PE   PAMP GG  M   G
Sbjct:  434 DEATGARILIRALEEPARQIAANAGEEGSVIVNAVVGSDKARYGFNAATGEYVEDMVAAGIVDPAKVTRTALQNAASIGALILTTE--AIVSDKPEKAAPAMPQGGGDMGGMG 544          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CLOBB (60 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 41/102 (40.20%), Postives = 63/102 (61.76%), Query Frame = -1
Query:  397 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMP 702
            D  + ++G  I+ ++L  PL+ IA N GV GSV+ EKV   +    G +A  G Y +++ +GI+DP KV R  L++A+S + TFL ++    EI + EPAMP
Sbjct:  430 DVQDTELGIKIIVKSLEEPLRQIASNAGVEGSVIIEKV-KNSEVGTGYDALYGKYVNMIKSGIVDPTKVTRSALQNAASVSATFLTTEAAVAEIPQKEPAMP 530          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CLOBA (60 kDa chaperonin OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=groL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 41/102 (40.20%), Postives = 63/102 (61.76%), Query Frame = -1
Query:  397 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMP 702
            D  + ++G  I+ ++L  PL+ IA N GV GSV+ EKV   +    G +A  G Y +++ +GI+DP KV R  L++A+S + TFL ++    EI + EPAMP
Sbjct:  430 DVQDTELGIKIIVKSLEEPLRQIASNAGVEGSVIIEKV-KNSEVGTGYDALYGKYVNMIKSGIVDPTKVTRSALQNAASVSATFLTTEAAVAEIPQKEPAMP 530          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_PROMT (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain NATL2A) GN=groL2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 45/110 (40.91%), Postives = 59/110 (53.64%), Query Frame = -1
Query:  370 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEP--EPAMPGGNPMANSG 693
            ++K G +I+KRAL  P K IA N G NG VV   +        G NA TG YEDL+ AGI+D  KV+R  L+ A S A   + ++    +  EP   P   GG+PM   G
Sbjct:  434 DQKTGVEIIKRALTAPTKQIAINAGFNGDVVVSDIKRLGK---GFNAQTGEYEDLLEAGILDASKVIRLALQDAVSIASLLITTEVVIADKPEPPSAPGAEGGDPMGGMG 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_BURTA (60 kDa chaperonin 2 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=groL2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 49/114 (42.98%), Postives = 66/114 (57.89%), Query Frame = -1
Query:  361 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGGNPMANSGYGY 699
            N ++K G +IV RAL  PL+ I  N G   SVV   V + + + YG NAATG Y DL+ +G++DP KV R  L++A+S A   L +D    E  K+  PA P G P A  G G+
Sbjct:  433 NVDQKAGINIVLRALEEPLRQIVANAGEEASVVVATVAAGSGN-YGYNAATGEYGDLVESGVLDPTKVTRTALQNAASIAGLLLTTDATVHEAPKDAPPAQPAGVPGA-GGTGF 544          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_THEFY (60 kDa chaperonin 1 OS=Thermobifida fusca (strain YX) GN=groL1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 48/109 (44.04%), Postives = 59/109 (54.13%), Query Frame = -1
Query:  367 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGY 693
            +E +GA IV+RA+  PLK IA N G  G VV EKV S      G NAATG Y DL   G+IDP KV R  L++A+S A  FL ++    E  E   A   G  M    +
Sbjct:  434 DEAIGASIVRRAVEEPLKQIAINAGYEGGVVVEKVKS-LEPGIGLNAATGEYTDLFKDGVIDPTKVTRSALQNAASIAGLFLTTEAVIAEKPEKPAANNAGGDMGGMDF 541          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_TSUPA (60 kDa chaperonin OS=Tsukamurella paurometabola GN=groL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 51/108 (47.22%), Postives = 64/108 (59.26%), Query Frame = -1
Query:  370 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 693
            +E  GA+IVK AL  P+K IA N G+   VV+EKV +      G NAATG YEDL+AAGI DP KV R  L++ASS A  FL ++   V   +PE A    +P    G
Sbjct:  432 DEATGANIVKVALDAPVKQIAINAGLEPGVVAEKVRNSPAGT-GLNAATGVYEDLLAAGINDPVKVTRSALQNASSIAALFLTTE--AVVADKPEKAGAPVDPTGGMG 536          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_RICCK (60 kDa chaperonin OS=Rickettsia canadensis (strain McKiel) GN=groL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = -1
Query:  364 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 705
            ++N +++ G +IV  AL  PLK I +N G NG VV  K+L   +  +G NA    Y D++ AGIIDP KVVR  L+ A+S A   + ++   V+    EP+     PM  SG G
Sbjct:  431 VENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLEHKDKNFGFNAQDMQYVDMIQAGIIDPAKVVRTALQDAASVASLIITTETLIVD----EPSKEEPMPMRGSGMG 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_PELPD (60 kDa chaperonin OS=Pelobacter propionicus (strain DSM 2379) GN=groL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 50/128 (39.06%), Postives = 70/128 (54.69%), Query Frame = -1
Query:  334 LDN----DEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYGY*AN*QGPGG 705
            LDN    +E++ G  +VK AL  P++ IA N G++ S+V +KV +     +G +AA+  Y D++ AGIIDP KV R  L++ASS A   L ++    E    E AM GG P    G G      G GG
Sbjct:  426 LDNLNLENEQQFGVTVVKLALEAPIRQIADNAGIDASIVVDKVRN-GKDAFGYDAASDEYVDMLKAGIIDPTKVSRSALQNASSIAGLMLTTEALIAEKPREEGAMGGGMPGGMGGMGGMGGMGGMGG 552          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_PARL1 (60 kDa chaperonin OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=groL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 42/113 (37.17%), Postives = 63/113 (55.75%), Query Frame = -1
Query:  364 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 702
            DN + + G +I++RAL  P++ I +N GV GS+V +KVL      +G +A    Y DL+AAGIIDP KVVR  L+ A+S A   + ++    +  + +     G P    G G
Sbjct:  431 DNRDIQAGINIIRRALEAPIRQIVENAGVEGSIVVQKVLESKQANFGFDAQKEEYCDLVAAGIIDPTKVVRTALQDAASIAGLLITTEAMIADAPKKDNGAAAGMPGGMGGMG 543          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_DEIRA3.153e-1343.3660 kDa chaperonin OS=Deinococcus radiodurans GN=gr... [more]
CH60_CLOBB3.153e-1340.2060 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CLOBA3.153e-1340.2060 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH602_PROMT3.153e-1340.9160 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_BURTA3.153e-1342.9860 kDa chaperonin 2 OS=Burkholderia thailandensis ... [more]
CH601_THEFY3.153e-1344.0460 kDa chaperonin 1 OS=Thermobifida fusca (strain ... [more]
CH60_TSUPA4.118e-1347.2260 kDa chaperonin OS=Tsukamurella paurometabola GN... [more]
CH60_RICCK4.118e-1339.4760 kDa chaperonin OS=Rickettsia canadensis (strain... [more]
CH60_PELPD4.118e-1339.0660 kDa chaperonin OS=Pelobacter propionicus (strai... [more]
CH60_PARL14.118e-1337.1760 kDa chaperonin OS=Parvibaculum lavamentivorans ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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