CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:165..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_BRUMB (60 kDa chaperonin OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=groL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 699
            N +++ G +IV+RA+  P + I  N G   SV+  K+L   +  +G N A G Y DL++ GI+DP KVVR  L++A+S A   + ++    E+ + + A P G P    G G
Sbjct:  432 NADQEAGINIVRRAIQAPARQITTNAGEEASVIVGKILENTSETFGYNTANGEYGDLISLGIVDPVKVVRTALQNAASVAGLLITTEAMIAELPKKD-AAPAGMPGGMGGMG 542          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_BRUC2 (60 kDa chaperonin OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=groL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 699
            N +++ G +IV+RA+  P + I  N G   SV+  K+L   +  +G N A G Y DL++ GI+DP KVVR  L++A+S A   + ++    E+ + + A P G P    G G
Sbjct:  432 NADQEAGINIVRRAIQAPARQITTNAGEEASVIVGKILENTSETFGYNTANGEYGDLISLGIVDPVKVVRTALQNAASVAGLLITTEAMIAELPKKD-AAPAGMPGGMGGMG 542          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_BRUAB (60 kDa chaperonin OS=Brucella abortus GN=groL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 699
            N +++ G +IV+RA+  P + I  N G   SV+  K+L   +  +G N A G Y DL++ GI+DP KVVR  L++A+S A   + ++    E+ + + A P G P    G G
Sbjct:  432 NADQEAGINIVRRAIQAPARQITTNAGEEASVIVGKILENTSETFGYNTANGEYGDLISLGIVDPVKVVRTALQNAASVAGLLITTEAMIAELPKKD-AAPAGMPGGMGGMG 542          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_BRUA2 (60 kDa chaperonin OS=Brucella abortus (strain 2308) GN=groL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 699
            N +++ G +IV+RA+  P + I  N G   SV+  K+L   +  +G N A G Y DL++ GI+DP KVVR  L++A+S A   + ++    E+ + + A P G P    G G
Sbjct:  432 NADQEAGINIVRRAIQAPARQITTNAGEEASVIVGKILENTSETFGYNTANGEYGDLISLGIVDPVKVVRTALQNAASVAGLLITTEAMIAELPKKD-AAPAGMPGGMGGMG 542          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_BRUA1 (60 kDa chaperonin OS=Brucella abortus (strain S19) GN=groL PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 699
            N +++ G +IV+RA+  P + I  N G   SV+  K+L   +  +G N A G Y DL++ GI+DP KVVR  L++A+S A   + ++    E+ + + A P G P    G G
Sbjct:  432 NADQEAGINIVRRAIQAPARQITTNAGEEASVIVGKILENTSETFGYNTANGEYGDLISLGIVDPVKVVRTALQNAASVAGLLITTEAMIAELPKKD-AAPAGMPGGMGGMG 542          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_SYNFM (60 kDa chaperonin 2 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=groL2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 47/103 (45.63%), Postives = 62/103 (60.19%), Query Frame = -1
Query:  394 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVE---IKEPEPAMPG 693
            E+  G  IV RAL  P++ IA N G  GSVV ++V  +    +G NA T  YEDL AAG+IDP KVVR  L++A+S A   L ++    E    ++P PAMPG
Sbjct:  434 EDAFGVKIVMRALEEPVRQIANNAGHEGSVVVQQV-KQGTGSHGFNADTEVYEDLSAAGVIDPTKVVRFALQNAASVASLLLTTEAMIAEKPKKQKPAPAMPG 535          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_SALAI (60 kDa chaperonin 2 OS=Salinispora arenicola (strain CNS-205) GN=groL2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = -1
Query:  337 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVE-IKEPEPAMPGGNPMANSGYGY*AN*QGPG 693
            +E+VG  IV++AL  PL+ IA+N G +G VV +KV  + +  +G +AATG Y DL  AGI+DP KV R  + +A+S A   L ++   VE  +EPEPA  G       G+G+  +  GPG
Sbjct:  433 DEQVGVSIVRKALIEPLRWIAQNAGHDGYVVVQKVAGK-DWGHGLDAATGEYVDLAKAGILDPVKVTRNAVANAASIAGLLLTTESLVVEKPQEPEPAAAG------HGHGH-GHQHGPG 544          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_MYCUA (60 kDa chaperonin 2 OS=Mycobacterium ulcerans (strain Agy99) GN=groL2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 49/108 (45.37%), Postives = 64/108 (59.26%), Query Frame = -1
Query:  370 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 693
            +E  GA+IV+ AL  PLK IA N G+   VV+EKV +      G NAATG YEDL+ AG+ DP KV R  L++A+S A  FL ++   V  K  + A P G+P    G
Sbjct:  432 DEATGANIVRVALEAPLKQIAFNGGLEPGVVAEKVRNSPVGT-GLNAATGVYEDLLKAGVADPVKVTRSALQNAASIAGLFLTTE-AVVADKPEKAAAPAGDPTGGMG 537          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_PROMP (60 kDa chaperonin 1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=groL1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 44/112 (39.29%), Postives = 59/112 (52.68%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE--PAMPGGNPMANSG 699
            +D+   G DI+  AL  P K IAKN G NG VV   +        G NA  G YE+L  +GI+DP KV+R  L+ + S A   + ++    +I EPE  P  PG +PM   G
Sbjct:  432 SDDLTTGIDIITNALLEPTKQIAKNAGFNGDVVIADIKRLGK---GFNANNGEYENLNESGILDPTKVIRLALQDSVSIAAMIITTEVAVADIPEPEAAPGGPGADPMGGMG 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = -1
Query:  475 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEH 693
            +E++GADI+++AL  P  LIA+N G+ G VV EKV +R   + G NA T  YE+L+ AG+IDP KV RC L++
Sbjct:  424 DERLGADILQKALVAPASLIAQNAGIEGEVVVEKVKAR-EWEIGYNAMTDKYENLVEAGVIDPAKVTRCALQN 495          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BRUMB5.379e-1335.7160 kDa chaperonin OS=Brucella melitensis biotype 2... [more]
CH60_BRUC25.379e-1335.7160 kDa chaperonin OS=Brucella canis (strain ATCC 2... [more]
CH60_BRUAB5.379e-1335.7160 kDa chaperonin OS=Brucella abortus GN=groL PE=3... [more]
CH60_BRUA25.379e-1335.7160 kDa chaperonin OS=Brucella abortus (strain 2308... [more]
CH60_BRUA15.379e-1335.7160 kDa chaperonin OS=Brucella abortus (strain S19)... [more]
CH602_SYNFM5.379e-1345.6360 kDa chaperonin 2 OS=Syntrophobacter fumaroxidan... [more]
CH602_SALAI5.379e-1342.5060 kDa chaperonin 2 OS=Salinispora arenicola (stra... [more]
CH602_MYCUA5.379e-1345.3760 kDa chaperonin 2 OS=Mycobacterium ulcerans (str... [more]
CH601_PROMP5.379e-1339.2960 kDa chaperonin 1 OS=Prochlorococcus marinus sub... [more]
RUBA_RICCO7.025e-1350.68RuBisCO large subunit-binding protein subunit alph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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