CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_ANASL (60 kDa chaperonin 1 OS=Anabaena sp. (strain L31) GN=groL1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 47/104 (45.19%), Postives = 62/104 (59.62%), Query Frame = -1
Query:  391 DEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEP--AMPGG 696
            DEE  GA IV RAL  PLK IA+N G NG+V++E+V  +       NAAT  + D+ +AGI+DP KV R  L++A S A   L +   G  + +PEP  A P G
Sbjct:  434 DEELTGALIVARALPAPLKRIAENAGQNGAVIAERVKEK-EFNVDFNAATNEFVDMFSAGIVDPAKVTRSALQNALSYACMVLTT---GTVVDKPEPKDAAPAG 533          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_THENE (60 kDa chaperonin OS=Thermotoga neapolitana GN=groL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = -1
Query:  397 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMP 705
            LD DE K+GA IV +AL  P++ IA+N G +G+V+ EK+L+  +  YG +A  G + ++   GIIDP KV R  L++A+S A   L ++   VE  E +   P
Sbjct:  431 LDGDE-KIGAQIVYKALSAPIRQIAENAGYDGAVIIEKILASDDPAYGFDALRGEFGNMFEKGIIDPAKVTRSALQNAASIAGMLLTTEVLVVEKPEEKKETP 532          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_RICFE (60 kDa chaperonin OS=Rickettsia felis GN=groL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 45/111 (40.54%), Postives = 62/111 (55.86%), Query Frame = -1
Query:  391 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE------PAMPGG 705
            +DN +++ G +IV  AL  PLK I +N G NG VV  K+L   +  YG NA    Y D++ AGIIDP KVVR  L+ A+S A   + ++   + + EP       P M GG
Sbjct:  430 VDNKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLEHKDKNYGFNAQDMQYVDMIKAGIIDPAKVVRTALQDAASVASLIITTET--LIVDEPSDKEDSIPPMRGG 538          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_GEOSM (60 kDa chaperonin OS=Geobacter sp. (strain M21) GN=groL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 42/104 (40.38%), Postives = 65/104 (62.50%), Query Frame = -1
Query:  391 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE---PAMPGG 693
            E++ G +++KRAL  P++ I++N GV+GS+V +KV       +G NAA   Y D++ AGIIDP KV R  L++A+S A   + ++    +  + E   PAMPGG
Sbjct:  434 EQQFGVNVIKRALEEPIRQISQNAGVDGSIVVDKV-KNGKDAFGYNAADDVYVDMIEAGIIDPTKVSRSALQNAASVAGLMMTTEAMIADKPKEEGAMPAMPGG 536          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_GEOBB (60 kDa chaperonin OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=groL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 42/104 (40.38%), Postives = 65/104 (62.50%), Query Frame = -1
Query:  391 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE---PAMPGG 693
            E++ G +++KRAL  P++ I++N GV+GS+V +KV       +G NAA   Y D++ AGIIDP KV R  L++A+S A   + ++    +  + E   PAMPGG
Sbjct:  434 EQQFGVNVIKRALEEPIRQISQNAGVDGSIVVDKV-KNGKDAFGYNAADDVYVDMIEAGIIDPTKVSRSALQNAASVAGLMMTTEAMIADKPKEEGAMPAMPGG 536          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_DICTD (60 kDa chaperonin OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=groL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 40/99 (40.40%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  409 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE 705
            +DN++E++G +IV+R+L  PLKLIA N G  GS+++EKV    +   G +AA   + ++  AGI+DP KV R  L++A+S A   L ++  G+  ++PE
Sbjct:  431 VDNEDERIGVEIVRRSLDVPLKLIANNAGKEGSIIAEKV-KEMDGPMGYDAARDRFVNMFDAGIVDPCKVTRSALQNAASIAALVLTTE--GLVAEKPE 526          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH604_SINMW (60 kDa chaperonin 4 OS=Sinorhizobium medicae (strain WSM419) GN=groL4 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 44/114 (38.60%), Postives = 62/114 (54.39%), Query Frame = -1
Query:  361 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYGY 702
            +N E   G  IV++AL  P++ IA N GV GS+V  K++  ++   G +A T  Y D++ AGI+DP KVVR  L  A S A   + ++    +I E   A   GN  A  G GY
Sbjct:  432 ENPEITAGIAIVRKALEAPIRQIADNAGVEGSIVIGKLVDSSDQNQGFDAQTETYVDMIKAGIVDPAKVVRTALRDAGSIAALLITAEAMVADIPEKNAAQNAGNG-AMGGRGY 544          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_BURPS (60 kDa chaperonin 2 OS=Burkholderia pseudomallei GN=groL2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 47/108 (43.52%), Postives = 61/108 (56.48%), Query Frame = -1
Query:  379 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGGNPMA 699
            N ++K G  IV RAL  PL+ I  N G   SVV   V +   + YG NAATG Y DL+ +G++DP KV R  L++A+S A   L +D    E  K+  PA P G P A
Sbjct:  433 NADQKAGISIVLRALEEPLRQIVANAGEEASVVVATVAAGQGN-YGYNAATGEYGDLVESGVLDPTKVTRTALQNAASIAGLLLTTDATVHEAPKDAPPAAPAGVPGA 539          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_BURP1 (60 kDa chaperonin 2 OS=Burkholderia pseudomallei (strain 1710b) GN=groL2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 47/108 (43.52%), Postives = 61/108 (56.48%), Query Frame = -1
Query:  379 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGGNPMA 699
            N ++K G  IV RAL  PL+ I  N G   SVV   V +   + YG NAATG Y DL+ +G++DP KV R  L++A+S A   L +D    E  K+  PA P G P A
Sbjct:  433 NADQKAGISIVLRALEEPLRQIVANAGEEASVVVATVAAGQGN-YGYNAATGEYGDLVESGVLDPTKVTRTALQNAASIAGLLLTTDATVHEAPKDAPPAAPAGVPGA 539          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_PROAC (60 kDa chaperonin 1 OS=Propionibacterium acnes GN=groL1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 47/108 (43.52%), Postives = 59/108 (54.63%), Query Frame = -1
Query:  370 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 693
            +E  GA IV  A   PLK IA N G+ G VV+EKV      + G NAA   Y D++ AGIIDP KV R  L++A+S A  FL ++    +  EP  A  GG  M   G
Sbjct:  432 DELTGAQIVLAACTAPLKQIAINAGLEGGVVAEKVAGLPAGQ-GLNAANDEYVDMVEAGIIDPAKVTRSALQNAASIAALFLTTEAVIADKPEPVKAPAGGGDMDGMG 538          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_ANASL7.025e-1345.1960 kDa chaperonin 1 OS=Anabaena sp. (strain L31) G... [more]
CH60_THENE9.175e-1340.7860 kDa chaperonin OS=Thermotoga neapolitana GN=gro... [more]
CH60_RICFE9.175e-1340.5460 kDa chaperonin OS=Rickettsia felis GN=groL PE=3... [more]
CH60_GEOSM9.175e-1340.3860 kDa chaperonin OS=Geobacter sp. (strain M21) GN... [more]
CH60_GEOBB9.175e-1340.3860 kDa chaperonin OS=Geobacter bemidjiensis (strai... [more]
CH60_DICTD9.175e-1340.4060 kDa chaperonin OS=Dictyoglomus turgidum (strain... [more]
CH604_SINMW9.175e-1338.6060 kDa chaperonin 4 OS=Sinorhizobium medicae (stra... [more]
CH602_BURPS9.175e-1343.5260 kDa chaperonin 2 OS=Burkholderia pseudomallei G... [more]
CH602_BURP19.175e-1343.5260 kDa chaperonin 2 OS=Burkholderia pseudomallei (... [more]
CH601_PROAC9.175e-1343.5260 kDa chaperonin 1 OS=Propionibacterium acnes GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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