CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:165..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_THEBR (60 kDa chaperonin OS=Thermoanaerobacter brockii GN=groL PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = -1
Query:  379 KVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMA 687
            K GA IV RAL  P++ IA N GV+GSV+ EK+ +  +  +G +A    + D+  AGI+DP KV R  L++A+S A   L ++   V+I E    MP  NP A
Sbjct:  436 KTGAKIVLRALEEPVRQIATNAGVDGSVIVEKIKAAKDPNFGYDAYKEEFTDMFKAGIVDPTKVTRTALQNAASIASMILTTEAIVVDIPEKNTGMP--NPGA 536          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_RICM5 (60 kDa chaperonin OS=Rickettsia massiliae (strain Mtu5) GN=groL PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 45/113 (39.82%), Postives = 62/113 (54.87%), Query Frame = -1
Query:  370 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGV-EIKEPEPAMPGGNPMANSG 705
            ++N +++ G +IV  AL  PLK I +N G NG VV  K+L   +  YG NA    Y D++ AGIIDP KVVR  L+ A+S A   + ++   V E  + E  MP    M   G
Sbjct:  431 VENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLEHKDKNYGFNAQDMQYVDMIKAGIIDPAKVVRTALQDAASVASLIITTETLIVDESSDKEEPMPMRGGMGGMG 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_RICCN (60 kDa chaperonin OS=Rickettsia conorii GN=groL PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = -1
Query:  370 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 705
            ++N +++ G +IV  AL  PLK I +N G NG VV  K+L   +  YG NA    Y D++ AGIIDP KVVR  L+ A+S A   + ++   V+    EP+     PM   G
Sbjct:  431 VENKDQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLEHKDKNYGFNAQDMQYVDMIKAGIIDPAKVVRTALQDAASVASLIITTETLIVD----EPSSDKAEPMPMRG 538          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_RAT (60 kDa heat shock protein, mitochondrial OS=Rattus norvegicus GN=Hspd1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 43/112 (38.39%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 699
            N+++K+G +I+KRAL  P   IAKN GV GS++ EK+L +++ + G +A  G++ +++  GIIDP KVVR  L  A+  A     ++    EI + E   PG   M   G G
Sbjct:  458 NEDQKIGIEIIKRALKIPAMTIAKNAGVEGSLIVEKIL-QSSSEVGYDAMLGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEKD-PGMGAMGGMGGG 567          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_PSYA2 (60 kDa chaperonin OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=groL PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = -1
Query:  394 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPG 702
            DND++  G +I++RA+  PL+ I  N G   SVV  +V S + + YG NAA+G Y D++  GI+DP KV R  LE+A+S A   L ++    ++ + +  M G
Sbjct:  431 DNDDQNAGINILRRAMEAPLRQIVTNSGEEASVVVNEVKSGSGN-YGYNAASGEYGDMLEMGILDPAKVARSALENAASVAGLMLTTEVMITDLPQGDDGMAG 532          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_MOUSE (60 kDa heat shock protein, mitochondrial OS=Mus musculus GN=Hspd1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 43/112 (38.39%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 699
            N+++K+G +I+KRAL  P   IAKN GV GS++ EK+L +++ + G +A  G++ +++  GIIDP KVVR  L  A+  A     ++    EI + E   PG   M   G G
Sbjct:  458 NEDQKIGIEIIKRALKIPAMTIAKNAGVEGSLIVEKIL-QSSSEVGYDAMLGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEKD-PGMGAMGGMGGG 567          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_LACSS (60 kDa chaperonin OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=groL PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  370 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGG-NPMANSG 702
            +  + + G +IV RAL  P++ IA N G+ GSV+ EKV S+   + G NAA GN+E+++ AGI+DP KV R  L++A+S A   L ++    +  E  PA   G +P A  G
Sbjct:  429 EEGDVQTGINIVLRALEEPVRQIATNAGLEGSVIVEKVKSQPV-EVGYNAANGNWENMIEAGILDPTKVTRSALQNAASVAALMLTTEAVVADKPEDNPAPAAGMDPSAMGG 539          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CRIGR (60 kDa heat shock protein, mitochondrial OS=Cricetulus griseus GN=HSPD1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 43/112 (38.39%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 699
            N+++K+G +I+KRAL  P   IAKN GV GS++ EK+L +++ + G +A  G++ +++  GIIDP KVVR  L  A+  A     ++    EI + E   PG   M   G G
Sbjct:  458 NEDQKIGIEIIKRALKIPAMTIAKNAGVEGSLIVEKIL-QSSSEIGYDAMLGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEKD-PGMGAMGGMGGG 567          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CHICK (60 kDa heat shock protein, mitochondrial OS=Gallus gallus GN=HSPD1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 41/104 (39.42%), Postives = 64/104 (61.54%), Query Frame = -1
Query:  394 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI--KEPEPAMPG 699
            N+++K+G +I+KR L  P   IAKN GV GS++ EK+L +++ + G +A  G + +++  GIIDP KVVR  L  A+  A     ++    E+  +E EPAM G
Sbjct:  458 NEDQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVEKIL-QSSSEVGYDAMLGEFVNMVEKGIIDPTKVVRTALMDAAGVASLLSTAEAVVTEVPKEEKEPAMGG 560          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_BACHD (60 kDa chaperonin OS=Bacillus halodurans GN=groL PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = -1
Query:  364 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 693
            +E  G +IV RAL  P++ IA N G+ GSV+ E+ L +    +G NAATG + +++ AGI+DP KV R  L+HA+S +  FL ++   V   +PE    GG      G G
Sbjct:  432 DEATGVNIVLRALEEPVRQIAHNAGLEGSVIVER-LKKEEAGFGFNAATGEWVNMVEAGIVDPTKVTRSALQHAASVSAMFLTTE--AVIADKPEENEGGGGMPDMGGMG 538          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_THEBR1.198e-1241.7560 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]
CH60_RICM51.198e-1239.8260 kDa chaperonin OS=Rickettsia massiliae (strain ... [more]
CH60_RICCN1.198e-1239.2960 kDa chaperonin OS=Rickettsia conorii GN=groL PE... [more]
CH60_RAT1.198e-1238.3960 kDa heat shock protein, mitochondrial OS=Rattus... [more]
CH60_PSYA21.198e-1238.8360 kDa chaperonin OS=Psychrobacter arcticus (strai... [more]
CH60_MOUSE1.198e-1238.3960 kDa heat shock protein, mitochondrial OS=Mus mu... [more]
CH60_LACSS1.198e-1240.1860 kDa chaperonin OS=Lactobacillus sakei subsp. sa... [more]
CH60_CRIGR1.198e-1238.3960 kDa heat shock protein, mitochondrial OS=Cricet... [more]
CH60_CHICK1.198e-1239.4260 kDa heat shock protein, mitochondrial OS=Gallus... [more]
CH60_BACHD1.198e-1240.0060 kDa chaperonin OS=Bacillus halodurans GN=groL P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
back to top