CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_VIBC3 (60 kDa chaperonin 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=groL2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 43/103 (41.75%), Postives = 62/103 (60.19%), Query Frame = -1
Query:  397 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMP 702
            DN+E+ VG  +  RA+  PL+ I KN G   SVV+  V +   + YG NAATG Y+D++  GI+DP KV R  L+ A+S A   + ++    E+ K+  PAMP
Sbjct:  432 DNEEQNVGIRVALRAMEAPLRQIVKNAGDEESVVANNVRAGEGN-YGYNAATGVYDDMIEMGILDPTKVTRSALQFAASVAGLMITTEAMITELPKKDAPAMP 533          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_RHILO (60 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = -1
Query:  397 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMP 702
            +N+++K G +IV+RA+  P++ IA+N G  GS++  K+  +    +G NA T  + DL   G+IDP KVVR  L+ A+S A   + ++    E  + EPA+P
Sbjct:  432 ENEDQKHGIEIVRRAIEAPVRQIAENAGAEGSIIVGKLREKPEFGWGWNAQTNAFGDLYNEGVIDPVKVVRTALQDAASVAGLLVTTEAMVAEKPKKEPAVP 533          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_ROSS1 (60 kDa chaperonin 1 OS=Roseiflexus sp. (strain RS-1) GN=groL1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 47/110 (42.73%), Postives = 64/110 (58.18%), Query Frame = -1
Query:  397 DEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLS----RANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE------PAMP 696
            +EE++  +I++RAL  PL+ +A N G +GSVV  +V +      N  YG +  TG Y DLM AGIIDP KVVR  LE+A S A   L +D    +  EP+      P+MP
Sbjct:  433 EEERMALNILRRALEEPLRQLAINAGEDGSVVVNQVRTLQREHNNPNYGFDVMTGKYVDLMQAGIIDPAKVVRTALENAVSVAGIVLTTDALITDAPEPKKNGARTPSMP 542          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_RHISN (60 kDa chaperonin 1 OS=Rhizobium sp. (strain NGR234) GN=groL1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = -1
Query:  391 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKE---PEPAMPGG 702
            +N ++K G +IV+RAL  P++ IA+N G  GS++  K+  +    +G NA T  + DL   G+IDP KVVR  L+ A+S A   + ++    E  +   P P MPGG
Sbjct:  432 ENADQKHGIEIVRRALEAPVRQIAENAGAEGSIIVGKLREKTEFGFGWNAQTNEFGDLYDQGVIDPVKVVRTALQDAASVAGLLITTEAMVAEKPKKDAPLPPMPGG 538          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH62_MAIZE (Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 42/111 (37.84%), Postives = 60/111 (54.05%), Query Frame = -1
Query:  367 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGY 699
            N ++K+G  I++ AL  P+  IA N GV G+VV  K+L + N   G +AA   Y D++ AGIIDP KV+R  L  A+S +     ++   VEI + E   P    M    Y
Sbjct:  466 NFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQGNTDLGYDAAKDEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTESIIVEIPKEEAPAPAMGGMGGMDY 576          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_SYNWW (60 kDa chaperonin OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 48/120 (40.00%), Postives = 66/120 (55.00%), Query Frame = -1
Query:  334 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYGY*AN*QGPGG 693
            +E  G ++VK+A+  PL+ IA N G+ GSVV EKV   A    G NA TG YE ++AAGIIDP KV R  +++A+S +   L ++    E       +PG + M   G G      G GG
Sbjct:  433 DELTGINLVKKAMEEPLRQIANNAGIEGSVVVEKV-KEAETGIGYNALTGVYESMIAAGIIDPAKVTRSAVQNAASISAMVLTTEAVVSE-------LPGEDEMKGMGAGGMGGMGGMGG 544          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_STRU0 (60 kDa chaperonin OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = -1
Query:  391 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEP-EPAMPGG 693
            +E  G +IV RAL  P++ IA N G  GSVV +K L  +    G NAATG++ D++  GIIDP KV R  L++A+S A   L ++       EP  PAMPGG
Sbjct:  432 DEATGRNIVLRALEEPVRQIAYNAGYEGSVVIDK-LKNSPVGTGFNAATGDWVDMIETGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPAAPAMPGG 532          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_SHEPA (60 kDa chaperonin OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 699
            N+++K G  I  RA+  PL+ IA N G  GSVV+  V +   + YG NA    Y D++  GI+DP KV R  L+ ASS A   + ++C   E+KE    M G   M   G
Sbjct:  433 NEDQKHGVIIALRAMEAPLRQIAANAGEEGSVVANNVKNGTGN-YGYNAGNDTYGDMLEMGILDPTKVTRSALQFASSIAGLMITTECMVAEVKEDAADMGGMGGMGGMG 541          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_RICAH (60 kDa chaperonin OS=Rickettsia akari (strain Hartford) GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 44/104 (42.31%), Postives = 61/104 (58.65%), Query Frame = -1
Query:  397 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGV-EIKEPEPAMP 705
            ++N +++ G +IV  AL  PLK I +N G NG VV  K+L   +  YG NA    Y D++ AGIIDP KVVR  L+ A+S A   + ++   V E  + E AMP
Sbjct:  431 VENKDQQAGIEIVIEALKDPLKQIIENAGENGGVVVGKLLEHNDKNYGFNAQDMQYVDMIKAGIIDPAKVVRTALQDAASVASLIITTETLIVDEPSDKEDAMP 534          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_PSYCK (60 kDa chaperonin OS=Psychrobacter cryohalolentis (strain K5) GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = -1
Query:  394 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPG 702
            DND++  G +I++RA+  PL+ I  N G   SVV  +V S   + YG NAA+G Y D++  GI+DP KV R  LE+A+S A   L ++    ++ + +  M G
Sbjct:  431 DNDDQNAGINILRRAMEAPLRQIVTNSGEEASVVVNEVKSGTGN-YGYNAASGEYGDMLEMGILDPAKVARSALENAASVAGLMLTTEVMITDLPQGDDGMAG 532          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_VIBC31.198e-1241.7560 kDa chaperonin 2 OS=Vibrio cholerae serotype O1... [more]
CH602_RHILO1.198e-1237.2560 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=... [more]
CH601_ROSS11.198e-1242.7360 kDa chaperonin 1 OS=Roseiflexus sp. (strain RS-... [more]
CH601_RHISN1.198e-1238.3260 kDa chaperonin 1 OS=Rhizobium sp. (strain NGR23... [more]
CH62_MAIZE1.565e-1237.84Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=C... [more]
CH60_SYNWW1.565e-1240.0060 kDa chaperonin OS=Syntrophomonas wolfei subsp. ... [more]
CH60_STRU01.565e-1245.1060 kDa chaperonin OS=Streptococcus uberis (strain ... [more]
CH60_SHEPA1.565e-1239.0960 kDa chaperonin OS=Shewanella pealeana (strain A... [more]
CH60_RICAH1.565e-1242.3160 kDa chaperonin OS=Rickettsia akari (strain Hart... [more]
CH60_PSYCK1.565e-1238.8360 kDa chaperonin OS=Psychrobacter cryohalolentis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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