CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:165..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_ZYMMO (60 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = -1
Query:  391 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDC--GGVEIKEPEPAMPGG 699
            N++++ G DIV+RAL  P++ IA+N G +G+VV+ K++   + K G NA T  YEDL A G+IDP KVVR  L+ A+S A   + ++   G +   +P PAMPGG
Sbjct:  433 NEDQQRGIDIVRRALQAPVRQIAQNAGFDGAVVAGKLIDGNDDKIGFNAQTEKYEDLAATGVIDPTKVVRTALQDAASVAGLLITTEAAVGDLPEDKPAPAMPGG 537          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_PARD8 (60 kDa chaperonin OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=groL PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 50/113 (44.25%), Postives = 66/113 (58.41%), Query Frame = -1
Query:  364 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 702
            DN++E  G +IVKRA+  PL+ I  N G  G+V+ +KV       +G NA    +E+L  AG+IDP KV R  LE+A+S A  FL ++C   E KE  PAMP  NP    G G
Sbjct:  432 DNEDETTGIEIVKRAIEEPLRQIVANAGKEGAVIVQKV-KEGKGDFGYNARKDCFENLCEAGVIDPAKVTRVALENAASIAGMFLTTECVIAEKKEETPAMPPMNPGMGGGMG 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_LAWIP (60 kDa chaperonin OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=groL PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = -1
Query:  397 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMP 699
            +D+E  G +I++R+L  PL+ IA N G  GS+V EKV   A   +G NAA+G YEDL+ AG+IDP KV R  L++A+S A   L ++C   E  EP+  MP
Sbjct:  433 DDDELAGLNIIRRSLEEPLRQIAANAGYEGSIVVEKV-REAKDGFGFNAASGEYEDLIKAGVIDPKKVTRIALQNAASVASLLLTTECAIAEKPEPKKDMP 532          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_RHOP2 (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain HaA2) GN=groL1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 48/112 (42.86%), Postives = 69/112 (61.61%), Query Frame = -1
Query:  370 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGGNPMANSG 702
            DN + + G +IV +AL  P++ IA+N GV GS+V  K+L   +  +G +A T +Y D++A GI+DP KVVR  L+ ASS A   + ++    E+ KE  PAMPGG  M   G
Sbjct:  432 DNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEDYVDMLAKGIVDPAKVVRTALQDASSVAALLVTTEAMVAELPKEAAPAMPGGGGMGGMG 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_DESDG (60 kDa chaperonin OS=Desulfovibrio desulfuricans (strain G20) GN=groL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVE-IKEPEPAMPGGNPMANSG 699
            +D+E  G  I++RA+  PL+ IA N G  GS++ EKV       +G NAATG +EDL+AAG+IDP KV R  L++A+S A   L ++C   E  KE  PA P    M   G
Sbjct:  433 DDDEAAGVTIIRRAIEEPLRQIAANAGFEGSIICEKV-KEGKDAFGFNAATGEFEDLIAAGVIDPKKVSRIALQNAASVASLLLTTECAIAEKPKEDAPAAPAMGGMGGMG 542          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_DESDA (60 kDa chaperonin OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=groL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 50/112 (44.64%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEP--EPAMPGGNPMANSG 699
            +D+E  G +I++RA+  PL+ IA N G  GS+V EKV       +G NAATG YEDL+ AG+IDP KV R  L++A+S A   L ++C   E  EP  + AMP    M   G
Sbjct:  433 DDDELAGVNIIRRAIEEPLRQIALNAGFEGSIVVEKV-REGKDGFGFNAATGEYEDLIKAGVIDPKKVTRTALQNAASVASLLLTTECAIAEKPEPKKDAAMPDMGGMGGMG 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CAMFF (60 kDa chaperonin OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=groL PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 51/108 (47.22%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  370 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 693
            +E +GA+IVKRAL  PL+ IA+N G +  VV+  V       YG NAA+G Y D+  AGIIDP KV R  L++A S A   L ++    EIKE +PAMP   PM + G
Sbjct:  432 DELIGAEIVKRALFAPLRQIAENAGFDAGVVANSVSCADCPNYGFNAASGEYVDMFEAGIIDPVKVERIALQNAVSVASLLLTTEATVSEIKEDKPAMP---PMPDMG 536          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_BACTN (60 kDa chaperonin OS=Bacteroides thetaiotaomicron GN=groL PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 50/106 (47.17%), Postives = 65/106 (61.32%), Query Frame = -1
Query:  385 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNP 702
            DN +E  G  I+KRA+  PL+ I  N G  G+VV +KV       +G NA T  YE+L AAG++DP KV R  LE+A+S A  FL ++C  VE KE +P MP G P
Sbjct:  432 DNADETTGIGIIKRAIEEPLREIVANAGKEGAVVVQKV-REGKGDFGYNARTDVYENLHAAGVVDPAKVARVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_NITWN (60 kDa chaperonin 1 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 46/109 (42.20%), Postives = 68/109 (62.39%), Query Frame = -1
Query:  382 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVE--IKEPEPAMPGGNPM 702
            DN ++K G DIV+RA+  P + I +N G +GS+V  K+L +  + +G NAATG Y+DL+  G+IDP KVVR  L+ A+S A   + ++    E   K+  PA+P G  M
Sbjct:  432 DNPDQKAGVDIVRRAIQVPARQIIQNAGEDGSLVVGKLLEKNTYNWGFNAATGEYQDLVGVGVIDPAKVVRTALQDAASVASLLITTEALVAEKPKKDVAPALPPGGGM 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_NITSB (60 kDa chaperonin OS=Nitratiruptor sp. (strain SB155-2) GN=groL PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 48/110 (43.64%), Postives = 65/110 (59.09%), Query Frame = -1
Query:  364 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 693
            +EK+GA+I+ RA+  PLK IA+N G +  VV+  V +  N   G NAATG Y D+  AGI+DP KV R  L++A S A   L ++    EIKE +PA P  +     G G
Sbjct:  434 DEKIGAEIILRAIKAPLKQIAENAGFDPGVVANNVENAENENTGFNAATGEYVDMFEAGIVDPAKVERVALQNAVSVASLLLTTEATVSEIKEDKPAAPAPDMGGMGGMG 543          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ZYMMO3.599e-1744.7660 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=... [more]
CH60_PARD83.599e-1744.2560 kDa chaperonin OS=Parabacteroides distasonis (s... [more]
CH60_LAWIP3.599e-1746.5360 kDa chaperonin OS=Lawsonia intracellularis (str... [more]
CH601_RHOP23.599e-1742.8660 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH60_DESDG4.701e-1744.1460 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH60_DESDA4.701e-1744.6460 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH60_CAMFF6.140e-1747.2260 kDa chaperonin OS=Campylobacter fetus subsp. fe... [more]
CH60_BACTN6.140e-1747.1760 kDa chaperonin OS=Bacteroides thetaiotaomicron ... [more]
CH601_NITWN6.140e-1742.2060 kDa chaperonin 1 OS=Nitrobacter winogradskyi (s... [more]
CH60_NITSB8.019e-1743.6460 kDa chaperonin OS=Nitratiruptor sp. (strain SB1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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