CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:165..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CLOPH (60 kDa chaperonin OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=groL PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 46/103 (44.66%), Postives = 63/103 (61.17%), Query Frame = -1
Query:  385 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNP 693
            +E+ GA I+ +AL  PL  IA+N G+ G+V+  KV  +     G NA T  Y D++  GI+DP KV R  L++A+S A TFL ++     IKEP PAMP G P
Sbjct:  434 DERTGAQIILKALEAPLSCIAQNAGLEGAVIVNKVREKKTG-VGFNALTEKYVDMVEDGILDPSKVTRSALQNATSVASTFLTTEAAVASIKEPAPAMPAGGP 535          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 51/99 (51.52%), Postives = 66/99 (66.67%), Query Frame = -1
Query:  403 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPA 699
            N EE+VGA+IV RAL  PL  IA N G+ GSVV EKVL +    +G +A TG Y D+ A GI+DP KVVR  L++A+S A  +L ++   VE  EP+PA
Sbjct:  433 NAEEQVGAEIVYRALQAPLFQIAHNAGLEGSVVVEKVLEK-EMPFGFDALTGTYVDMFAQGIVDPAKVVRSALQNAASIAGMYLTTEAIVVEKPEPKPA 530          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_ANAVT (60 kDa chaperonin 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 50/112 (44.64%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  361 DEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYGY 696
            DEE  GA IV RAL  PLK IA+N G NG+V++E+V  +A    G NAAT  + D+  AGI+DP KV R  L++A+S A   L ++C  V+  EP+ A P G       + Y
Sbjct:  434 DEELTGALIVARALPAPLKRIAENAGQNGAVIAERVKEKA-FNVGFNAATNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEPKDAAPAGAGAGGGDFDY 544          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH603_NITHX (60 kDa chaperonin 3 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 48/114 (42.11%), Postives = 68/114 (59.65%), Query Frame = -1
Query:  367 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI--KEPEPAMPGGNPMANSGY 702
            DN + + G +IV +AL  P++ IA+N GV GS+V  KVL      +G +A    Y D++A GIIDP KVVR  L+ A+S A   + ++    E+  +EP PAMPGG  M   G+
Sbjct:  432 DNPDVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKVLENKTETFGFDAQKEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKEEPAPAMPGGGGMGGMGF 545          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = -1
Query:  382 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE----PAMPGGNPM 693
            EEK+GA I+++AL  PL+ IA+N G+ GSV++EKV +     +G NA T  YEDL+AAGIIDP KV R  L++A+S A   L ++C  + + +PE    PA  GG  M
Sbjct:  434 EEKIGARIIQKALEGPLRQIAENAGLEGSVIAEKVRN-LEFNFGFNAMTNEYEDLVAAGIIDPVKVTRSALQNAASIAAMVLTTEC--IVVDKPEDDKTPAGAGGGGM 538          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_SULMW (60 kDa chaperonin OS=Sulcia muelleri (strain GWSS) GN=groL PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 50/114 (43.86%), Postives = 70/114 (61.40%), Query Frame = -1
Query:  364 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 705
            +DN ++  G  IVKR+L  PL+ I  N G  GSV+  KV    N ++G +A  G Y+++++ GIIDP KV R  LE+A+S +   L ++C   EIK+ EPAMP    M NSG G
Sbjct:  431 VDNVDQDTGIKIVKRSLQEPLRQIVANAGEEGSVIVAKVAEGKN-EFGYDAKLGEYKNMISEGIIDPTKVTRVALENAASVSGMLLTTECVITEIKKEEPAMP---QMPNSGMG 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_DICDI (60 kDa heat shock protein, mitochondrial OS=Dictyostelium discoideum GN=hspA PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = -1
Query:  397 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKE--PEPAMP 705
            +DN ++ +G  IV+ AL  P K IA N GV GSVV  ++LS+ + +YG NA  G YE+++ AGIIDP KVVR  L  A+S A     ++   VEIK+  P P MP
Sbjct:  447 MDNFDQTIGVKIVRDALLIPCKTIANNAGVEGSVVIGRLLSKRDFEYGYNAQKGVYENMIQAGIIDPTKVVRTALIDAASVASLMTTTEAMVVEIKKDTPMPQMP 551          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_ACICJ (60 kDa chaperonin OS=Acidiphilium cryptum (strain JF-5) GN=groL PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 42/113 (37.17%), Postives = 71/113 (62.83%), Query Frame = -1
Query:  364 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 702
            DND+++ G DI+++A+  P++ IA+N G +G+V+S KVL   ++ +G +A +G ++D++ AGIIDP KVVR  L+ A+S A   + ++   +  + PE   P G      G G
Sbjct:  432 DNDDQRFGIDIIRKAVLAPMRQIAENAGEDGAVISGKVLDNDDYSFGFDAQSGEFKDMVKAGIIDPTKVVRTALQDAASVAGLLITTE--AMVAERPEKKAPAGGDAGMGGMG 542          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH604_RHIEC (60 kDa chaperonin 4 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL4 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = -1
Query:  382 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVE--IKEPEPAMPGGNPM 699
            ND+++VG +IV+RAL  P + IA+N G  GSVV  K+  +++  YG NA TG + DL A G+IDP KVVR  L+ ASS A   + ++    E   K+  PAMP G  M
Sbjct:  433 NDDQRVGVEIVRRALEAPARQIAENAGAEGSVVVGKLREKSDFSYGWNAQTGEFGDLYAQGVIDPAKVVRTALQDASSIAGLLVTTEAMIAEKPKKDAPPAMPAGAGM 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_PROMP (60 kDa chaperonin 2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=groL2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 48/111 (43.24%), Postives = 70/111 (63.06%), Query Frame = -1
Query:  361 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYGY 693
            EE +GA+IV+ +L  PL  IA+N G NG+V++E V S+  +  G NAATG+Y D+ AAGI+DP KV R  L++A+S A   L ++C   ++ E + A P G P     + Y
Sbjct:  435 EELIGANIVEASLTSPLMRIAENAGSNGAVIAENVKSKPFND-GFNAATGDYVDMSAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDAAPAGAPGMGGDFDY 544          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CLOPH8.019e-1744.6660 kDa chaperonin OS=Clostridium phytofermentans (... [more]
CH602_SYNJB8.019e-1751.5260 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]
CH601_ANAVT8.019e-1744.6460 kDa chaperonin 1 OS=Anabaena variabilis (strain... [more]
CH603_NITHX1.047e-1642.1160 kDa chaperonin 3 OS=Nitrobacter hamburgensis (s... [more]
CH601_GLOVI1.047e-1647.2260 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]
CH60_SULMW1.368e-1643.8660 kDa chaperonin OS=Sulcia muelleri (strain GWSS)... [more]
CH60_DICDI1.368e-1646.6760 kDa heat shock protein, mitochondrial OS=Dictyo... [more]
CH60_ACICJ1.368e-1637.1760 kDa chaperonin OS=Acidiphilium cryptum (strain ... [more]
CH604_RHIEC1.368e-1645.3760 kDa chaperonin 4 OS=Rhizobium etli (strain CFN ... [more]
CH602_PROMP1.368e-1643.2460 kDa chaperonin 2 OS=Prochlorococcus marinus sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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