CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:165..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CAMHC (60 kDa chaperonin OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=groL PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  397 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMP 693
            +EK+GADIVKRAL  PL+ IA+N G +  V++  V       YG +AA G + ++  AGIIDP KV R  L++A S A   L ++    EIKE +PAMP
Sbjct:  432 DEKIGADIVKRALFAPLRQIAENAGFDAGVIANAVSINKEKAYGFDAACGEFVNMFEAGIIDPVKVERVALQNAVSVASLLLTTEATVSEIKEDKPAMP 530          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_AQUAE (60 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = -1
Query:  439 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHK---YGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSD 702
            DN ++++G DI+K+A+  PLK IA N G +GSVV EKV+     K   +G NAATG Y D+  AGIIDP KVVR  +E+A+S A T L ++
Sbjct:  432 DNHDQQLGIDIIKKAVRTPLKQIAYNAGYDGSVVLEKVIELGKEKGVSWGFNAATGEYVDMYEAGIIDPTKVVRTAIENAASVAGTMLTAE 522          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_PROMM (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9313) GN=groL2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = -1
Query:  361 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYGY 693
            EE +G++IV+ +L  PL  IA+N G NG+VV+E V SR     G NAATG+Y D++AAGI+DP KV R  L++A+S A   L ++C   ++ E + A P G       + Y
Sbjct:  435 EELIGSNIVEASLAAPLMRIAENAGANGAVVAENVKSRPISD-GYNAATGDYIDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKEAAPAGGGGMGGDFDY 544          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_BRAJA (60 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN=groL2 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 43/112 (38.39%), Postives = 68/112 (60.71%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 699
            ND++K G +IV++AL YP + IA N G +GSV+  K+L +  + YG ++ TG Y +L++ GIIDP KVVR  +++A+S A   + ++    E+ +      GG P    G G
Sbjct:  433 NDDQKTGVEIVRKALSYPARQIAINAGEDGSVIVGKILEKDQYSYGYDSQTGEYGNLVSKGIIDPTKVVRVAIQNAASVAALLITTEAMVAEVPKKNTG-AGGMPPGGGGMG 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_NITHX (60 kDa chaperonin 1 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 42/106 (39.62%), Postives = 68/106 (64.15%), Query Frame = -1
Query:  391 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE---PAMPGG 699
            ND++K G +IV++AL  P + IA N G +GS++  K+L +  + YG ++ TG Y +L++ GIIDP KVVR  +++A+S A   + ++    E+ +     PAMPGG
Sbjct:  433 NDDQKTGVEIVRKALSAPARQIAINAGEDGSIIVGKILEKEQYSYGFDSQTGEYVNLISKGIIDPTKVVRAAIQNAASVAALLITTEAMVAELPKKNAAAPAMPGG 538          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = -1
Query:  385 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNP 705
            L++ +E++GADIV++AL  P  LIA+N G+ G VV EK++  +  + G NA T  YE+L+ AG+IDP KV RC L++A+S A   L +    + + +P+P  P   P
Sbjct:  437 LEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMF-SEWEIGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQ--AIVVDKPKPKAPTAAP 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CAUCR (60 kDa chaperonin OS=Caulobacter crescentus GN=groL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 45/107 (42.06%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  382 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPM 702
            DND++  G  IV+RAL  P++ IA+N GV GS+V  K+L   N  +G NA T  Y DL+  G+IDP KVVR  L++A+S A   + ++   VE  +     P G  M
Sbjct:  432 DNDDQTAGIAIVRRALQAPIRQIAENAGVEGSIVVGKILENDNSAFGFNAQTEQYVDLVVDGVIDPAKVVRTALQNAASVAGLLITTEAAIVEAPKKGGGAPAGGGM 538          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CAUCN (60 kDa chaperonin OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=groL PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 45/107 (42.06%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  382 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPM 702
            DND++  G  IV+RAL  P++ IA+N GV GS+V  K+L   N  +G NA T  Y DL+  G+IDP KVVR  L++A+S A   + ++   VE  +     P G  M
Sbjct:  432 DNDDQTAGIAIVRRALQAPIRQIAENAGVEGSIVVGKILENDNSAFGFNAQTEQYVDLVVDGVIDPAKVVRTALQNAASVAGLLITTEAAIVEAPKKGGGAPAGGGM 538          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_BACFO (60 kDa chaperonin OS=Bacteroides forsythus GN=groL PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 48/111 (43.24%), Postives = 64/111 (57.66%), Query Frame = -1
Query:  370 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 702
            +N++E  G +IVKRA+  PL+ I  N G  G+VV +KV       +G NA T  YEDL  AG++DP KV R  LE+A+S A  FL ++C   + KE  PA P    M   G
Sbjct:  432 ENEDETTGIEIVKRAIEEPLRQIVNNAGKEGAVVVQKV-KEGTGAFGYNARTDVYEDLSEAGVVDPAKVTRIALENAASIAGMFLTTECVVADKKEEAPAPPMNPGMGGMG 541          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH605_SINMW (60 kDa chaperonin 5 OS=Sinorhizobium medicae (strain WSM419) GN=groL5 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = -1
Query:  391 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGG 702
            +ND++  G +IV+RAL  P + I +N G   S+V  K+L +    +G NA TG Y D++A GIIDP KVVR  L+ A+S A   + ++    E+ K+  PAMPGG
Sbjct:  431 ENDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKDTDDFGYNAQTGEYGDMIAMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGG 535          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CAMHC3.047e-1646.4660 kDa chaperonin OS=Campylobacter hominis (strain... [more]
CH60_AQUAE3.047e-1650.5560 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3... [more]
CH602_PROMM3.047e-1643.2460 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_BRAJA3.047e-1638.3960 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN... [more]
CH601_NITHX3.047e-1639.6260 kDa chaperonin 1 OS=Nitrobacter hamburgensis (s... [more]
RUB1_BRANA3.980e-1642.06RuBisCO large subunit-binding protein subunit alph... [more]
CH60_CAUCR3.980e-1642.0660 kDa chaperonin OS=Caulobacter crescentus GN=gro... [more]
CH60_CAUCN3.980e-1642.0660 kDa chaperonin OS=Caulobacter crescentus (strai... [more]
CH60_BACFO3.980e-1643.2460 kDa chaperonin OS=Bacteroides forsythus GN=groL... [more]
CH605_SINMW3.980e-1642.8660 kDa chaperonin 5 OS=Sinorhizobium medicae (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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