CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:234..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_ANASL (60 kDa chaperonin 2 OS=Anabaena sp. (strain L31) GN=groL2 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 83/155 (53.55%), Postives = 106/155 (68.39%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            K++KLR+E+ALNATKAA           TL+ L+SKVD IK   + +EEK+GADIVKRAL  PL+ IA NAG  GSV+  +V  SD    GYNAATG +EDL+AAGIIDP KVVR  L++A+S+A   L ++ +VVE  E +PA+PA   M   G
Sbjct:  388 KDRKLRIENALNATKAAVAESIGPGGGKTLIYLASKVDPIKAYFE-EEEKIGADIVKRALEAPLRQIADNAGEEGSVIVSRVKDSD-FNVGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKPAVPADPGMGGMG 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_SYNY3 (60 kDa chaperonin 2 OS=Synechocystis sp. (strain PCC 6803) GN=groL2 PE=1 SV=4)

HSP 1 Score: 142.895 bits (359), Expect = 1.851e-33
Identity = 79/155 (50.97%), Postives = 104/155 (67.10%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            K++KLR+EDALNATKAA           TL+RL+ K+++ K  L NDEE+V ADI+ +AL  PL  +A NAGV GSV+ EKV  +  ++ GYN  TG  EDL+AAGIIDP KVVR  L++A+S+A   L ++ +VVE  +PEPA PA   M   G
Sbjct:  390 KDRKLRIEDALNATKAAVEEGIVPGGGTTLIRLAGKIESFKAQLSNDEERVAADIIAKALEAPLHQLASNAGVEGSVIVEKVKEATGNQ-GYNVITGKIEDLIAAGIIDPAKVVRSALQNAASIAGMVLTTEALVVE--KPEPAAPAMPDMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_THEVL (60 kDa chaperonin 2 OS=Thermosynechococcus vulcanus GN=groL2 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.491e-32
Identity = 79/155 (50.97%), Postives = 102/155 (65.81%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            K++KLR+EDALNATKAA           TLL L+S++DA+  +L + EE+ GA IV  AL  P+  IA NAG  G+VV E V + D   YG+NAATG YEDL++AGIIDP KVVR  L++A S+A   L ++ +VVE  EP+PA PA   M   G
Sbjct:  388 KDRKLRLEDALNATKAAVAEGIVPGGGVTLLHLASRIDALLPSL-SPEEQTGARIVASALAAPVAQIADNAGAEGAVVVENVRAGD-FNYGFNAATGAYEDLVSAGIIDPAKVVRSALQNAGSIAGMVLTTEALVVEKPEPKPAAPANGGMGGMG 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_THEEB (60 kDa chaperonin 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.491e-32
Identity = 79/155 (50.97%), Postives = 102/155 (65.81%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            K++KLR+EDALNATKAA           TLL L+S++DA+  +L + EE+ GA IV  AL  P+  IA NAG  G+VV E V + D   YG+NAATG YEDL++AGIIDP KVVR  L++A S+A   L ++ +VVE  EP+PA PA   M   G
Sbjct:  388 KDRKLRLEDALNATKAAVAEGIVPGGGVTLLHLASRIDALLPSL-SPEEQTGARIVASALAAPVAQIADNAGAEGAVVVENVRAGD-FNYGFNAATGAYEDLVSAGIIDPAKVVRSALQNAGSIAGMVLTTEALVVEKPEPKPAAPANGGMGGMG 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_COXBU (60 kDa chaperonin OS=Coxiella burnetii GN=groL PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 68/156 (43.59%), Postives = 103/156 (66.03%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            L+R+   +D+++  ++N++++VG +I +RA+ YPL  I KN GV  +VV++KVL+  +  YGYNAATG Y D++  GI+DPTKV R  L++A+S+A   + ++C+V E  K+ E +MP G  M   G
Sbjct:  390 KEKKARVEDALHATRAAVEEGVVPGGGVALIRVLKSLDSVE--VENEDQRVGVEIARRAMAYPLSQIVKNTGVQAAVVADKVLNHKDVNYGYNAATGEYGDMIEMGILDPTKVTRTALQNAASIAGLMITTECMVTEAPKKKEESMPGGGDMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_COXBR (60 kDa chaperonin OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=groL PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 68/156 (43.59%), Postives = 103/156 (66.03%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            L+R+   +D+++  ++N++++VG +I +RA+ YPL  I KN GV  +VV++KVL+  +  YGYNAATG Y D++  GI+DPTKV R  L++A+S+A   + ++C+V E  K+ E +MP G  M   G
Sbjct:  390 KEKKARVEDALHATRAAVEEGVVPGGGVALIRVLKSLDSVE--VENEDQRVGVEIARRAMAYPLSQIVKNTGVQAAVVADKVLNHKDVNYGYNAATGEYGDMIEMGILDPTKVTRTALQNAASIAGLMITTECMVTEAPKKKEESMPGGGDMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_COXBN (60 kDa chaperonin OS=Coxiella burnetii (strain Dugway 5J108-111) GN=groL PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 68/156 (43.59%), Postives = 103/156 (66.03%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            L+R+   +D+++  ++N++++VG +I +RA+ YPL  I KN GV  +VV++KVL+  +  YGYNAATG Y D++  GI+DPTKV R  L++A+S+A   + ++C+V E  K+ E +MP G  M   G
Sbjct:  390 KEKKARVEDALHATRAAVEEGVVPGGGVALIRVLKSLDSVE--VENEDQRVGVEIARRAMAYPLSQIVKNTGVQAAVVADKVLNHKDVNYGYNAATGEYGDMIEMGILDPTKVTRTALQNAASIAGLMITTECMVTEAPKKKEESMPGGGDMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_COXB2 (60 kDa chaperonin OS=Coxiella burnetii (strain CbuG_Q212) GN=groL PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 68/156 (43.59%), Postives = 103/156 (66.03%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            L+R+   +D+++  ++N++++VG +I +RA+ YPL  I KN GV  +VV++KVL+  +  YGYNAATG Y D++  GI+DPTKV R  L++A+S+A   + ++C+V E  K+ E +MP G  M   G
Sbjct:  390 KEKKARVEDALHATRAAVEEGVVPGGGVALIRVLKSLDSVE--VENEDQRVGVEIARRAMAYPLSQIVKNTGVQAAVVADKVLNHKDVNYGYNAATGEYGDMIEMGILDPTKVTRTALQNAASIAGLMITTECMVTEAPKKKEESMPGGGDMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_COXB1 (60 kDa chaperonin OS=Coxiella burnetii (strain CbuK_Q154) GN=groL PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 68/156 (43.59%), Postives = 103/156 (66.03%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            L+R+   +D+++  ++N++++VG +I +RA+ YPL  I KN GV  +VV++KVL+  +  YGYNAATG Y D++  GI+DPTKV R  L++A+S+A   + ++C+V E  K+ E +MP G  M   G
Sbjct:  390 KEKKARVEDALHATRAAVEEGVVPGGGVALIRVLKSLDSVE--VENEDQRVGVEIARRAMAYPLSQIVKNTGVQAAVVADKVLNHKDVNYGYNAATGEYGDMIEMGILDPTKVTRTALQNAASIAGLMITTECMVTEAPKKKEESMPGGGDMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_RHORT (60 kDa chaperonin 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.467e-30
Identity = 71/156 (45.51%), Postives = 104/156 (66.67%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGY 470
            KEKK RV+DA++AT+AA            LL  +  +DA+     N ++KVG +IV+RAL  P++ IA+NAGV+G+VV+ K+L S +  +GYNA TG YE+L+  G+IDPTKVVR  L+ A+SVA   + ++ +V EI E +PA+PAG  M +  +
Sbjct:  390 KEKKDRVDDAMHATRAAVEEGIIAGGGVALLHAAKALDALSPA--NADQKVGIEIVRRALQAPVRQIAENAGVDGAVVAGKLLESSDADFGYNAQTGVYENLVKVGVIDPTKVVRTALQGAASVASLLITTEAMVAEIPEKKPALPAGGGMGDMDF 543          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_ANASL4.871e-3453.5560 kDa chaperonin 2 OS=Anabaena sp. (strain L31) G... [more]
CH602_SYNY31.851e-3350.9760 kDa chaperonin 2 OS=Synechocystis sp. (strain P... [more]
CH602_THEVL3.491e-3250.9760 kDa chaperonin 2 OS=Thermosynechococcus vulcanu... [more]
CH602_THEEB3.491e-3250.9760 kDa chaperonin 2 OS=Thermosynechococcus elongat... [more]
CH60_COXBU2.955e-3143.5960 kDa chaperonin OS=Coxiella burnetii GN=groL PE=... [more]
CH60_COXBR2.955e-3143.5960 kDa chaperonin OS=Coxiella burnetii (strain RSA... [more]
CH60_COXBN2.955e-3143.5960 kDa chaperonin OS=Coxiella burnetii (strain Dug... [more]
CH60_COXB22.955e-3143.5960 kDa chaperonin OS=Coxiella burnetii (strain Cbu... [more]
CH60_COXB12.955e-3143.5960 kDa chaperonin OS=Coxiella burnetii (strain Cbu... [more]
CH601_RHORT1.467e-3045.5160 kDa chaperonin 1 OS=Rhodospirillum rubrum (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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