CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:234..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_THENE (60 kDa chaperonin OS=Thermotoga neapolitana GN=groL PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.285e-26
Identity = 65/147 (44.22%), Postives = 95/147 (64.63%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 443
            KEKK R+EDAL+AT+AA           TLLR    V+ + E LD DE K+GA IV +AL  P++ IA+NAG +G+V+ EK+L+SD+  YG++A  G + ++   GIIDP KV R  L++A+S+A   L ++ +VVE  E +   P+
Sbjct:  388 KEKKHRIEDALSATRAAVEEGIVPGGGVTLLRSRKAVEKLLEELDGDE-KIGAQIVYKALSAPIRQIAENAGYDGAVIIEKILASDDPAYGFDALRGEFGNMFEKGIIDPAKVTRSALQNAASIAGMLLTTEVLVVEKPEEKKETPS 533          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BACTN (60 kDa chaperonin OS=Bacteroides thetaiotaomicron GN=groL PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.285e-26
Identity = 68/150 (45.33%), Postives = 91/150 (60.67%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KEKK RV+DAL AT+AA             +R    ++ +K   DN +E  G  I+KRA+  PL+ I  NAG  G+VV +KV       +GYNA T  YE+L AAG++DP KV R  LE+A+S+A  FL ++CV+VE KE +P MP G P
Sbjct:  390 KEKKDRVDDALRATRAAIEEGIIPGGGVAYIRAIDSLEGMKG--DNADETTGIGIIKRAIEEPLREIVANAGKEGAVVVQKVREGKGD-FGYNARTDVYENLHAAGVVDPAKVARVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_AZOC5 (60 kDa chaperonin 2 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=groL2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.285e-26
Identity = 65/151 (43.05%), Postives = 97/151 (64.24%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAG 446
            KEKK RV+DAL+AT+AA            LLR    ++ +K  ++N ++K G DIV+RA+  P + I  NAG +GSVV  K+L ++ + +GYNA TG Y D++A+GIIDP KVVR  L+ A+S++   + ++ +VVE+ +     PAMP G
Sbjct:  390 KEKKDRVDDALHATRAAVEEGIVPGGGVALLRAIKVLEGLK--VENTDQKTGIDIVRRAIQAPARQIVANAGDDGSVVVGKILENETYTFGYNAQTGEYVDMVASGIIDPAKVVRTALQDAASISALIITTEALVVELPKKAAAAPAMPGG 538          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_PROMT (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL2A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.285e-26
Identity = 67/151 (44.37%), Postives = 96/151 (63.58%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 455
            K+KKLR+EDA+NATKAA           TL  L+  +     +  + EE +GA+IV+ AL  PL  IA+NAG NG+VV+E V S   +  GYNAATG Y D+++AGI+DP KV R  L++A+S+A   L ++C+V ++ E + +  AG  M
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALGDWSSSNLSGEELIGANIVEAALTSPLMRIAENAGANGAVVAENVKSKPVND-GYNAATGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDSSSAGGGM 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_BRAJA (60 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN=groL1 PE=2 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.285e-26
Identity = 68/153 (44.44%), Postives = 99/153 (64.71%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE-IKEPEPAMPAGNPMD 458
            KE+K RV+DA++AT+AA            LLR    +DAIK    N ++K G DIV+RA+  P + I +NAG +GS+V  K+L + ++ +G+NAA+G Y+DL  AG+IDP KVVR  L+ A+SVA   + ++ ++ E  K+ EPA PA  PMD
Sbjct:  390 KERKDRVDDAMHATRAAVEEGILPGGGVALLRGLKALDAIKTV--NADQKAGVDIVRRAIQVPARQIVQNAGEDGSLVVGKLLENSSYNWGFNAASGEYQDLAKAGVIDPAKVVRTALQDAASVAALLITTEALIAEKPKKSEPA-PAAPPMD 539          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_NITSB (60 kDa chaperonin OS=Nitratiruptor sp. (strain SB155-2) GN=groL PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.678e-26
Identity = 72/158 (45.57%), Postives = 97/158 (61.39%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDN-DEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DAL ATKAA            L+R ++KV+     LD   +EK+GA+I+ RA+  PLK IA+NAG +  VV+  V +++N   G+NAATG Y D+  AGI+DP KV R  L++A SVA   L ++  V EIKE +PA PA +     G G
Sbjct:  391 KEKKDRVDDALAATKAAVEEGIVIGGGTALVRAANKVN-----LDLCGDEKIGAEIILRAIKAPLKQIAENAGFDPGVVANNVENAENENTGFNAATGEYVDMFEAGIVDPAKVERVALQNAVSVASLLLTTEATVSEIKEDKPAAPAPDMGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CAUCR (60 kDa chaperonin OS=Caulobacter crescentus GN=groL PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.678e-26
Identity = 66/151 (43.71%), Postives = 92/151 (60.93%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 455
            KEKK RV+DALNAT+AA            LL+ S  +  +    DND++  G  IV+RAL  P++ IA+NAGV GS+V  K+L +DN  +G+NA T  Y DL+  G+IDP KVVR  L++A+SVA   + ++  +VE  +     PAG  M
Sbjct:  390 KEKKDRVDDALNATRAAADEGIVPGGGTALLKASKALAGVVG--DNDDQTAGIAIVRRALQAPIRQIAENAGVEGSIVVGKILENDNSAFGFNAQTEQYVDLVVDGVIDPAKVVRTALQNAASVAGLLITTEAAIVEAPKKGGGAPAGGGM 538          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CAUCN (60 kDa chaperonin OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=groL PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.678e-26
Identity = 66/151 (43.71%), Postives = 92/151 (60.93%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 455
            KEKK RV+DALNAT+AA            LL+ S  +  +    DND++  G  IV+RAL  P++ IA+NAGV GS+V  K+L +DN  +G+NA T  Y DL+  G+IDP KVVR  L++A+SVA   + ++  +VE  +     PAG  M
Sbjct:  390 KEKKDRVDDALNATRAAADEGIVPGGGTALLKASKALAGVVG--DNDDQTAGIAIVRRALQAPIRQIAENAGVEGSIVVGKILENDNSAFGFNAQTEQYVDLVVDGVIDPAKVVRTALQNAASVAGLLITTEAAIVEAPKKGGGAPAGGGM 538          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CAMHC (60 kDa chaperonin OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=groL PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.678e-26
Identity = 69/146 (47.26%), Postives = 92/146 (63.01%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 440
            KEKK RV+DAL+ATKAA            L++  +   A+KE L  DE K+GADIVKRAL  PL+ IA+NAG +  V++  V  +    YG++AA G + ++  AGIIDP KV R  L++A SVA   L ++  V EIKE +PAMP
Sbjct:  389 KEKKDRVDDALSATKAAVEEGIVIGGGAALIKAGN---AVKENLKGDE-KIGADIVKRALFAPLRQIAENAGFDAGVIANAVSINKEKAYGFDAACGEFVNMFEAGIIDPVKVERVALQNAVSVASLLLTTEATVSEIKEDKPAMP 530          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_ACIBL (60 kDa chaperonin OS=Acidobacteria bacterium (strain Ellin345) GN=groL PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.678e-26
Identity = 67/148 (45.27%), Postives = 91/148 (61.49%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 446
            KEKK RVEDA++AT+AA            L+R    VDA+K T D   E +GA+I+KRAL  PL+ I  NAG  G++V  K+    +  YGYNA T  Y DL+ AG+IDPTKV R  L++A S+A   L ++ ++ EI E + + PAG
Sbjct:  399 KEKKARVEDAMHATRAAVEEGIVPGGGVALIRCVEAVDALKLTGD---EGIGANIIKRALEEPLRQIVGNAGEEGAIVVGKIRDHKDPHYGYNAQTSEYVDLVKAGVIDPTKVTRTALQNAGSIAGLMLTTEALISEIPEEKKSEPAG 543          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_THENE1.285e-2644.2260 kDa chaperonin OS=Thermotoga neapolitana GN=gro... [more]
CH60_BACTN1.285e-2645.3360 kDa chaperonin OS=Bacteroides thetaiotaomicron ... [more]
CH602_AZOC51.285e-2643.0560 kDa chaperonin 2 OS=Azorhizobium caulinodans (s... [more]
CH601_PROMT1.285e-2644.3760 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH601_BRAJA1.285e-2644.4460 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN... [more]
CH60_NITSB1.678e-2645.5760 kDa chaperonin OS=Nitratiruptor sp. (strain SB1... [more]
CH60_CAUCR1.678e-2643.7160 kDa chaperonin OS=Caulobacter crescentus GN=gro... [more]
CH60_CAUCN1.678e-2643.7160 kDa chaperonin OS=Caulobacter crescentus (strai... [more]
CH60_CAMHC1.678e-2647.2660 kDa chaperonin OS=Campylobacter hominis (strain... [more]
CH60_ACIBL1.678e-2645.2760 kDa chaperonin OS=Acidobacteria bacterium (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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