CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:234..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH605_RHIME (60 kDa chaperonin 5 OS=Rhizobium meliloti GN=groL5 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.678e-26
Identity = 66/154 (42.86%), Postives = 94/154 (61.04%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 458
            KEKK RV+DAL+AT+AA            LLR    +D +K    N++++VG D+V+RA+  P++ IA+NAG  GS++  K+       YG+NA T  Y DL A G+IDP KVVR  L+ A+SVA   + ++ ++ E   KE  PA+PAG  MD
Sbjct:  390 KEKKDRVDDALHATRAAVEEGILPGGGVALLRAVKALDGLKTA--NNDQRVGVDLVRRAIEAPVRQIAENAGAEGSIIVGKLREKTEFSYGWNAQTNEYGDLYAMGVIDPAKVVRTALQDAASVAGLLVTTEAMIAEKPKKEAAPALPAGGGMD 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH603_BRASO (60 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain ORS278) GN=groL3 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.678e-26
Identity = 71/156 (45.51%), Postives = 95/156 (60.90%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 467
            KEKK RVEDALNAT+AA            LLR    V  I  T  N + + G +IV +AL  P++ IA+NAGV GS+V  K+L   +  +G++A T +Y D++A GIIDP KVVR  L+ ASSVA   + ++ +V E+ K+  PAMPAG  M   G
Sbjct:  390 KEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRI--TNPNSDVQAGINIVLKALEAPMRQIAENAGVEGSIVVGKILEEKSETFGFDAQTEDYVDMVAKGIIDPAKVVRTALQDASSVAGLLVTTEAMVAELPKDAAPAMPAGGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH603_BRASB (60 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL3 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.678e-26
Identity = 63/152 (41.45%), Postives = 95/152 (62.50%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMD 458
            KE+K RV+DAL+AT+AA            LLR +  +D +K    N ++K G DI++RA+  P++ I +NAG +GS+V  K+L  D + +G+NAATG Y+DL+ AG+IDP KVVR  L+ A+SVA   + ++ +V +  +   A  A   MD
Sbjct:  390 KERKDRVDDALHATRAAVEEGILPGGGVALLRATKVLDGVKTA--NADQKAGVDIIRRAIQVPVRQIVQNAGEDGSLVVGKLLEKDTYSWGFNAATGEYQDLVQAGVIDPAKVVRTALQDAASVASLLITTEALVADKPKKAEATQAAPAMD 539          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_TRIEI (60 kDa chaperonin 2 OS=Trichodesmium erythraeum (strain IMS101) GN=groL2 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.678e-26
Identity = 66/158 (41.77%), Postives = 93/158 (58.86%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 476
            K++KLR+EDA+NATKAA           TL  L+ +++         EE  G+ IV RAL  PLK IA+NAG NG+V+ E+V   D    G+NAA   + D+  AGI+DP KV R  L++A+S+A   L ++C+VV+  EP+   PAG  M    + Y
Sbjct:  388 KDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPELETWANENLQSEELTGSLIVSRALLAPLKRIAENAGQNGAVIGERVKEKD-FNTGFNAANNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEPKENAPAGAGMGGGDFDY 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_SYNS9 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9902) GN=groL2 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.678e-26
Identity = 70/157 (44.59%), Postives = 96/157 (61.15%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG--NPMDNSG 467
            K +KLR+EDALNAT+AA           TLL+L+  ++A+   LD D+ + G +IV+R+L  P+  IA NAG NG VV E +  S     G+NA TG YEDLMA GI+D TKVVR  ++ A S+A   + ++ V+ +  EPEP   AG  +PM   G
Sbjct:  388 KNRKLRIEDALNATRAAVEEGIVAGGGSTLLQLAEDLNALAAQLDGDQ-RTGVEIVQRSLTAPVHQIATNAGHNGDVVIETMRQSGQ---GFNALTGVYEDLMATGIVDATKVVRLAVQDAVSIASLLVTTEVVIADKPEPEPPAGAGGEDPMGGMG 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_PROM5 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9515) GN=groL2 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.678e-26
Identity = 66/158 (41.77%), Postives = 98/158 (62.03%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 476
            K+KKLR+EDA+NATKAA           TL  L+  +    +   + EE +GA+IV+ +L  PL  IA+NAG NG+V++E V S   +  G+NAATG Y D+ +AGI+DP KV R  L++A+S+A   L ++C+V ++ E + + PAG P     + Y
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPILKEWADATLSGEELIGANIVEASLTAPLMRIAENAGSNGAVIAENVKSKPFND-GFNAATGEYVDMSSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADMPEKKESAPAGAPGMGGDFDY 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_NITHX (60 kDa chaperonin 2 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL2 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.678e-26
Identity = 64/154 (41.56%), Postives = 99/154 (64.29%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE---PAMPAGNPM 455
            KE+K RV+DA++AT+AA            LLR S ++  IK    ND++K G +IV++AL  P + IA NAG +GSV+  K+L  + + YG+++ +G Y +L++ GIIDPTKVVR  +++A+SVA   + ++ +V E+ +     PAMPAG  M
Sbjct:  390 KERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKRIKTA--NDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQSGEYGNLISKGIIDPTKVVRAAIQNAASVAALLITTEAMVAELPKKNAGGPAMPAGGGM 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_SPHWW (60 kDa chaperonin OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=groL PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.192e-26
Identity = 67/158 (42.41%), Postives = 99/158 (62.66%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSGYG 473
            KE+K RV+DAL+AT+AA            LL  +  +D +K    ND++  G DI++RA+  P+K IA+NAG +G+VV+  +L  ++   G+NAAT  YE+L+AAG+IDPTKVVR  L+ A+SVA   + ++  + E+ E + PAMP G      G G
Sbjct:  390 KERKDRVDDALHATRAAVEEGIVPGGGTALLYATKALDGLKGA--NDDQTRGIDIIRRAISAPVKQIAQNAGQDGAVVAGNLLRENDETKGFNAATDVYENLVAAGVIDPTKVVRTALQDAASVAGLLITTEATIAELPEDKAPAMPGGGMGGMGGMG 545          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_PROVI (60 kDa chaperonin OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=groL PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.192e-26
Identity = 70/158 (44.30%), Postives = 95/158 (60.13%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGV-NGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R    +D  K   DND++K G +I++RAL  PL+ I  N G  +G+VV E V + +   YG+NA T  YE+L+ AG++DPTKV R  LE+A+SVA   L ++  + +IKE  P MPA  P    G G
Sbjct:  390 KEKKARVEDALHATRAAVQEGIVVGGGVALIRAIKGLDNAKP--DNDDQKTGIEIIRRALEEPLRQIVANTGTTDGAVVLEHVKNGEGD-YGFNARTEQYENLVEAGVVDPTKVTRSALENAASVASILLTTEACITDIKENTPDMPAMPPGGMGGMG 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_PARD8 (60 kDa chaperonin OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=groL PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.192e-26
Identity = 68/157 (43.31%), Postives = 93/157 (59.24%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DAL+AT+AA             +R    ++ +K   DN++E  G +IVKRA+  PL+ I  NAG  G+V+ +KV       +GYNA    +E+L  AG+IDP KV R  LE+A+S+A  FL ++CV+ E KE  PAMP  NP    G G
Sbjct:  390 KEKKDRVDDALHATRAAIEEGTVPGGGVAYIRAIDALEGMKG--DNEDETTGIEIVKRAIEEPLRQIVANAGKEGAVIVQKVKEGKGD-FGYNARKDCFENLCEAGVIDPAKVTRVALENAASIAGMFLTTECVIAEKKEETPAMPPMNPGMGGGMG 543          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH605_RHIME1.678e-2642.8660 kDa chaperonin 5 OS=Rhizobium meliloti GN=groL5... [more]
CH603_BRASO1.678e-2645.5160 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain ... [more]
CH603_BRASB1.678e-2641.4560 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain ... [more]
CH602_TRIEI1.678e-2641.7760 kDa chaperonin 2 OS=Trichodesmium erythraeum (s... [more]
CH602_SYNS91.678e-2644.5960 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH602_PROM51.678e-2641.7760 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_NITHX1.678e-2641.5660 kDa chaperonin 2 OS=Nitrobacter hamburgensis (s... [more]
CH60_SPHWW2.192e-2642.4160 kDa chaperonin OS=Sphingomonas wittichii (strai... [more]
CH60_PROVI2.192e-2644.3060 kDa chaperonin OS=Prosthecochloris vibrioformis... [more]
CH60_PARD82.192e-2643.3160 kDa chaperonin OS=Parabacteroides distasonis (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
back to top