CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_LEGPN (60 kDa chaperonin OS=Legionella pneumophila GN=groL PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.192e-26
Identity = 65/157 (41.40%), Postives = 97/157 (61.78%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R    +D++K   DND++ +G +I++RA+  P++ I  NAG   SVV  KV    ++ YG+NAATG Y D++  GI+DPTKV R  L++A+SVA   L ++C+V ++ + E  + AG+     G G
Sbjct:  389 KEKKARVEDALHATRAAVEEGIVAGGGVALIRAQKALDSLKG--DNDDQNMGINILRRAIESPMRQIVTNAGYEASVVVNKVAEHKDN-YGFNAATGEYGDMVEMGILDPTKVTRMALQNAASVASLMLTTECMVADLPKKEEGVGAGDMGGMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_LEGPL (60 kDa chaperonin OS=Legionella pneumophila (strain Lens) GN=groL PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.192e-26
Identity = 65/157 (41.40%), Postives = 97/157 (61.78%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R    +D++K   DND++ +G +I++RA+  P++ I  NAG   SVV  KV    ++ YG+NAATG Y D++  GI+DPTKV R  L++A+SVA   L ++C+V ++ + E  + AG+     G G
Sbjct:  389 KEKKARVEDALHATRAAVEEGIVAGGGVALIRAQKALDSLKG--DNDDQNMGINILRRAIESPMRQIVTNAGYEASVVVNKVAEHKDN-YGFNAATGEYGDMVEMGILDPTKVTRMALQNAASVASLMLTTECMVADLPKKEEGVGAGDMGGMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_LEGPH (60 kDa chaperonin OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=groL PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.192e-26
Identity = 65/157 (41.40%), Postives = 97/157 (61.78%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R    +D++K   DND++ +G +I++RA+  P++ I  NAG   SVV  KV    ++ YG+NAATG Y D++  GI+DPTKV R  L++A+SVA   L ++C+V ++ + E  + AG+     G G
Sbjct:  389 KEKKARVEDALHATRAAVEEGIVAGGGVALIRAQKALDSLKG--DNDDQNMGINILRRAIESPMRQIVTNAGYEASVVVNKVAEHKDN-YGFNAATGEYGDMVEMGILDPTKVTRMALQNAASVASLMLTTECMVADLPKKEEGVGAGDMGGMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_LEGPC (60 kDa chaperonin OS=Legionella pneumophila (strain Corby) GN=groL PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.192e-26
Identity = 65/157 (41.40%), Postives = 97/157 (61.78%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R    +D++K   DND++ +G +I++RA+  P++ I  NAG   SVV  KV    ++ YG+NAATG Y D++  GI+DPTKV R  L++A+SVA   L ++C+V ++ + E  + AG+     G G
Sbjct:  389 KEKKARVEDALHATRAAVEEGIVAGGGVALIRAQKALDSLKG--DNDDQNMGINILRRAIESPMRQIVTNAGYEASVVVNKVAEHKDN-YGFNAATGEYGDMVEMGILDPTKVTRMALQNAASVASLMLTTECMVADLPKKEEGVGAGDMGGMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_LEGPA (60 kDa chaperonin OS=Legionella pneumophila (strain Paris) GN=groL PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.192e-26
Identity = 65/157 (41.40%), Postives = 97/157 (61.78%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R    +D++K   DND++ +G +I++RA+  P++ I  NAG   SVV  KV    ++ YG+NAATG Y D++  GI+DPTKV R  L++A+SVA   L ++C+V ++ + E  + AG+     G G
Sbjct:  389 KEKKARVEDALHATRAAVEEGIVAGGGVALIRAQKALDSLKG--DNDDQNMGINILRRAIESPMRQIVTNAGYEASVVVNKVAEHKDN-YGFNAATGEYGDMVEMGILDPTKVTRMALQNAASVASLMLTTECMVADLPKKEEGVGAGDMGGMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CHLP8 (60 kDa chaperonin OS=Chlorobaculum parvum (strain NCIB 8327) GN=groL PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.192e-26
Identity = 69/158 (43.67%), Postives = 96/158 (60.76%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGV-NGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R    ++  + T DND++K G DI++RAL  PL+ I  N G  +G+VV EKV S +   YG+NA T  YE+L+ AG++DPTKV R  LE+A+SVA   L ++  + ++ E +  MPA  P    G G
Sbjct:  390 KEKKARVEDALHATRAAVQEGIVAGGGVALIRAIKGLE--RATADNDDQKTGIDIIRRALEEPLRQIVANTGTTDGAVVLEKVRSGEGD-YGFNARTEEYENLVDAGVVDPTKVTRSALENAASVASILLTTEAAITDLPEDKADMPAMPPGGMGGMG 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_ACEP3 (60 kDa chaperonin OS=Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153) GN=groL PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.192e-26
Identity = 67/157 (42.68%), Postives = 101/157 (64.33%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE+K RV+DAL+AT+AA            L R + K++ +     ND+++VG DI++RAL  PL+ IA NAG +G+V++ KVL + ++ +G++A  G Y++L+ AGIIDP KVVR  L+ A+SVA   + ++ +V E  E + A PAG P D  G G
Sbjct:  390 KERKDRVDDALHATRAAVEEGIVPGGGTALARATLKLEGLH--YHNDDQRVGGDIIRRALQAPLRQIAHNAGEDGAVIANKVLENSDYNFGFDAQAGEYKNLVEAGIIDPAKVVRTALQDAASVAGLLITTEAMVAERPE-KKAAPAGGP-DMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH603_NITHX (60 kDa chaperonin 3 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL3 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.192e-26
Identity = 70/158 (44.30%), Postives = 94/158 (59.49%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAGNPMDNSGY 470
            KEKK RVEDALNAT+AA            LLR    V  I    DN + + G +IV +AL  P++ IA+NAGV GS+V  KVL +    +G++A    Y D++A GIIDP KVVR  L+ A+SVA   + ++ +V E+  +EP PAMP G  M   G+
Sbjct:  390 KEKKDRVEDALNATRAAVQEGIVPGGGTALLRAKKAVGRIAN--DNPDVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKVLENKTETFGFDAQKEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKEEPAPAMPGGGGMGGMGF 545          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_RHOPB (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisB18) GN=groL2 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.192e-26
Identity = 67/149 (44.97%), Postives = 93/149 (62.42%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAG 446
            KEKK RVEDALNAT+AA            LLR    V  I    DN + + G +IV +AL  P++ IA+NAGV GS+V  K+L + +  +G++A T  Y D++A GI+DP KVVR  L+ ASSVA   + ++C+V E+ ++  PAMP G
Sbjct:  390 KEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRISN--DNPDVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMLAKGIVDPAKVVRTALQDASSVAALLVTTECMVAEMPRDAAPAMPGG 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_BRAJA (60 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN=groL2 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.192e-26
Identity = 64/157 (40.76%), Postives = 96/157 (61.15%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE+K RV+DA++AT+AA            LLR S  +  I+    ND++K G +IV++AL YP + IA NAG +GSV+  K+L  D + YGY++ TG Y +L++ GIIDPTKVVR  +++A+SVA   + ++ +V E+ +       G P    G G
Sbjct:  390 KERKDRVDDAMHATRAAVEEGILPGGGVALLRASEHLKGIRTK--NDDQKTGVEIVRKALSYPARQIAINAGEDGSVIVGKILEKDQYSYGYDSQTGEYGNLVSKGIIDPTKVVRVAIQNAASVAALLITTEAMVAEVPKKNTG-AGGMPPGGGGMG 543          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LEGPN2.192e-2641.4060 kDa chaperonin OS=Legionella pneumophila GN=gro... [more]
CH60_LEGPL2.192e-2641.4060 kDa chaperonin OS=Legionella pneumophila (strai... [more]
CH60_LEGPH2.192e-2641.4060 kDa chaperonin OS=Legionella pneumophila subsp.... [more]
CH60_LEGPC2.192e-2641.4060 kDa chaperonin OS=Legionella pneumophila (strai... [more]
CH60_LEGPA2.192e-2641.4060 kDa chaperonin OS=Legionella pneumophila (strai... [more]
CH60_CHLP82.192e-2643.6760 kDa chaperonin OS=Chlorobaculum parvum (strain ... [more]
CH60_ACEP32.192e-2642.6860 kDa chaperonin OS=Acetobacter pasteurianus (str... [more]
CH603_NITHX2.192e-2644.3060 kDa chaperonin 3 OS=Nitrobacter hamburgensis (s... [more]
CH602_RHOPB2.192e-2644.9760 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH602_BRAJA2.192e-2640.7660 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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