CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH603_SINMW (60 kDa chaperonin 3 OS=Sinorhizobium medicae (strain WSM419) GN=groL3 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.738e-26
Identity = 66/154 (42.86%), Postives = 94/154 (61.04%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 458
            KEKK RV+DAL+AT+AA            LLR  + +D +K    ND+++VG +IV+RA+  P++ IA+NAG  GS++  K+       YG+NA T  Y DL   G+IDP KVVR  L+ A+SVA   + ++ ++ E   KE  PA+PAG  MD
Sbjct:  390 KEKKDRVDDALHATRAAVEEGILPGGGIALLRAVNALDGLKTA--NDDQRVGIEIVRRAIEAPVRQIAENAGAEGSIIVGKLREKVEFSYGWNAQTNEYGDLYTMGVIDPVKVVRTALQDAASVAGLLVTTEAMIAEKPKKESTPALPAGGGMD 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_RHOPS (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisB5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.738e-26
Identity = 68/156 (43.59%), Postives = 94/156 (60.26%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 467
            KEKK RVEDALNAT+AA            LLR    V  I    DN + + G +IV +AL  P++ IA+NAGV GS+V  K+L + +  +G++A T  Y D++A GI+DP KVVR  L+ A+SVA   + ++ +V E+ +E  PAMP G  M   G
Sbjct:  390 KEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINN--DNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMLAKGIVDPAKVVRTALQDAASVAALLVTTEAMVAELPREAAPAMPGGGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_MESSB (60 kDa chaperonin 2 OS=Mesorhizobium sp. (strain BNC1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.738e-26
Identity = 66/154 (42.86%), Postives = 96/154 (62.34%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 458
            KE+K RV+DA++AT+AA            LLR +  +D +  T +N+++KVG  IV+RA+  P++ IA+NAG  GS++  +V    +  YG+NA TG Y DL   G+IDP KVVR  L+ A+SVA   + ++ +V +   KE  PAMPAG  MD
Sbjct:  390 KERKDRVDDAMHATRAAVEEGLLPGGGVALLRAAKALDNV--TGENEDQKVGISIVRRAIEAPIRQIAENAGAEGSIIVGRVREKPDFGYGWNAQTGEYGDLYQMGVIDPVKVVRAALQDAASVAGLLITTEAMVADRPKKETAPAMPAGAGMD 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_RHIME (60 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.738e-26
Identity = 66/149 (44.30%), Postives = 91/149 (61.07%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAG 446
            KEKK R++DALNAT+AA            LLR S K+    E   ND++  G +IV+RAL  P + I +NAG   S+V  K+L  +   +GYNA TG Y D++A GIIDP KVVR  L+ A+SVA   + ++ ++ E+ K+  PAMP G
Sbjct:  390 KEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKITVKGE---NDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKNTDDFGYNAQTGEYGDMIAMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGG 535          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_BRASO (60 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ORS278) GN=groL1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.738e-26
Identity = 63/150 (42.00%), Postives = 97/150 (64.67%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KE+K RV+DAL+AT+AA            LLR +  +D +K    N ++K G DI++RA+  P++ I +NAG +GS+V  K+L  D++ +G+NAATG Y+DL+ AG+IDP KVVR  L+ A+SVA   + ++ +V +  +P+ A  A  P
Sbjct:  390 KERKDRVDDALHATRAAVEEGILPGGGVALLRATKVLDGVKTA--NADQKAGVDIIRRAIQVPVRQIVQNAGDDGSLVVGKLLEKDSYSWGFNAATGEYQDLVQAGVIDPAKVVRTALQDAASVASLLITTEALVAD--KPKKAETAAAP 535          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_METSB (60 kDa chaperonin OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=groL PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.882e-26
Identity = 65/156 (41.67%), Postives = 95/156 (60.90%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE-IKEPEPAMPAGNPMDNSG 467
            KEKK RV+DALNAT+AA            LLR    ++ +  T++N ++K G DIV++A+  P + I  N+G +G+VV  K++ + ++ YGYNA T  Y DL+  GIIDPTKVVR  L+ A+SV    + ++ ++ E  K+  PAMP G  M   G
Sbjct:  390 KEKKDRVDDALNATRAAVEEGVLPGGGVALLRAIKALEGL--TVENADQKTGVDIVRKAIQTPARQIVDNSGGDGAVVVGKLIENPSYAYGYNAQTDEYGDLVKLGIIDPTKVVRTALQDAASVGGLLITTEAIIAEQPKKDSPAMPGGGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_AGRT5 (60 kDa chaperonin OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=groL PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.882e-26
Identity = 64/146 (43.84%), Postives = 94/146 (64.38%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 440
            KEKK R++DALNAT+AA            LLR S+K+  +K    ND+++ G +IV++AL   ++ IA+NAG   S+V  K+L  +   YGYNA TG Y DL+A GI+DP KVVR  L++A+SVA   + ++ ++ E+ + E AMP
Sbjct:  390 KEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSTKI-TVKGV--NDDQEAGINIVRKALQSLVRQIAENAGDEASIVVGKILDKNEDNYGYNAQTGEYGDLIALGIVDPVKVVRTALQNAASVASLLITTEAMIAELPKKESAMP 532          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_PROM2 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9215) GN=groL1 PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.882e-26
Identity = 67/158 (42.41%), Postives = 96/158 (60.76%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAM---PAGNPMDNSG 467
            K KKLR+ED+LNATKAA           TL+ +S  +  + +T  +D+ + G +I+K AL  P K IAKNAG NG VV  ++   +    G+NA +G YEDL  +GI+DPTKV+R  L+ + S+A   L ++  + +I EPEPA    P+G+PM   G
Sbjct:  388 KYKKLRIEDSLNATKAAIEEGVVPGGGQTLIEISDDLLNLSQT-SSDDLRTGINIIKEALLEPTKQIAKNAGFNGDVVIAEIKRLNK---GFNANSGKYEDLKNSGILDPTKVIRLALQDSVSIAAMLLTTEVAIADIPEPEPAAPGGPSGDPMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_NITHX (60 kDa chaperonin 1 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.882e-26
Identity = 62/151 (41.06%), Postives = 97/151 (64.24%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE---PAMPAG 446
            KE+K RV+DA++AT+AA            LLR S ++  IK    ND++K G +IV++AL  P + IA NAG +GS++  K+L  + + YG+++ TG Y +L++ GIIDPTKVVR  +++A+SVA   + ++ +V E+ +     PAMP G
Sbjct:  390 KERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKRIKTA--NDDQKTGVEIVRKALSAPARQIAINAGEDGSIIVGKILEKEQYSYGFDSQTGEYVNLISKGIIDPTKVVRAAIQNAASVAALLITTEAMVAELPKKNAAAPAMPGG 538          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_BRASB (60 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.882e-26
Identity = 71/156 (45.51%), Postives = 95/156 (60.90%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 467
            KEKK RVEDALNAT+AA            LLR    V  I  T  N + + G +IV +AL  P++ IA+NAGV GS+V  K+L   +  +G++A + +Y D++A GIIDP KVVR  L+ ASSVA   + ++ +V E+ KE  PAMPAG  M   G
Sbjct:  390 KEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRI--TNPNSDVQAGINIVLKALEAPVRQIAENAGVEGSLVVGKILEEKSETFGFDAQSEDYVDMVAKGIIDPAKVVRTALQDASSVAGLLVTTEAMVAELPKEAAPAMPAGGGMGGMG 543          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH603_SINMW3.738e-2642.8660 kDa chaperonin 3 OS=Sinorhizobium medicae (stra... [more]
CH602_RHOPS3.738e-2643.5960 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH602_MESSB3.738e-2642.8660 kDa chaperonin 2 OS=Mesorhizobium sp. (strain B... [more]
CH601_RHIME3.738e-2644.3060 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1... [more]
CH601_BRASO3.738e-2642.0060 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ... [more]
CH60_METSB4.882e-2641.6760 kDa chaperonin OS=Methylocella silvestris (stra... [more]
CH60_AGRT54.882e-2643.8460 kDa chaperonin OS=Agrobacterium tumefaciens (st... [more]
CH601_PROM24.882e-2642.4160 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH601_NITHX4.882e-2641.0660 kDa chaperonin 1 OS=Nitrobacter hamburgensis (s... [more]
CH601_BRASB4.882e-2645.5160 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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