CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_METB6 (60 kDa chaperonin OS=Methanoregula boonei (strain 6A8) GN=groL PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.376e-26
Identity = 63/140 (45.00%), Postives = 86/140 (61.43%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE 422
            KEKK+R++DALNATKAA           TL R    +D +K     D+ +VG  IVKRAL  P++ IAKN+G+ G+ V  K+    N  YGYNA TG YEDLM  G+IDP KVVR  L++A S+A   L ++ ++ +  +
Sbjct:  390 KEKKMRMDDALNATKAAVEEGVVVGGGITLFRAIESLDTLKF---EDDRRVGVSIVKRALEEPIRQIAKNSGIEGAEVIAKIREHKNKHYGYNAKTGIYEDLMENGVIDPAKVVRIGLQNAGSIAGLILSTEVLITDFND 526          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_DICDI (60 kDa heat shock protein, mitochondrial OS=Dictyostelium discoideum GN=hspA PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.376e-26
Identity = 71/147 (48.30%), Postives = 91/147 (61.90%), Query Frame = 3
Query:    6 EKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE--PEPAMP 440
            EKK R+ DALNATKAA            LL  +  +  IK  +DN ++ +G  IV+ AL  P K IA NAGV GSVV  ++LS  + +YGYNA  G YE+++ AGIIDPTKVVR  L  A+SVA     ++ +VVEIK+  P P MP
Sbjct:  407 EKKDRITDALNATKAAVEEGIVPGGGTALLYSTLALKKIK--MDNFDQTIGVKIVRDALLIPCKTIANNAGVEGSVVIGRLLSKRDFEYGYNAQKGVYENMIQAGIIDPTKVVRTALIDAASVASLMTTTEAMVVEIKKDTPMPQMP 551          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH603_RHIL3 (60 kDa chaperonin 3 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=groL3 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.376e-26
Identity = 66/154 (42.86%), Postives = 93/154 (60.39%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 458
            KEKK RV+DAL+AT+AA            LLR    +D ++    N +++VG DIV+RA+  P + IA+NAG  GSV+  K+       YG+NA TG Y DL A G+IDP KVVR  L+ A+S+A   + ++ ++ E   K+  P MPAG+ MD
Sbjct:  390 KEKKDRVDDALHATRAAVEEGILPGGGVALLRAVKALDNVETA--NGDQRVGVDIVRRAVEAPARQIAENAGAEGSVIVGKLREKSEFSYGWNAQTGEYGDLYAQGVIDPAKVVRTALQDAASIAGLLVTTEAMIAEKPRKDAPPPMPAGHGMD 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH603_BRAJA (60 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN=groL3 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 6.376e-26
Identity = 63/154 (40.91%), Postives = 100/154 (64.94%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE---PAMPAGNPM 455
            KE+K RV+DA++AT+AA            LLR S ++  ++   +ND++K G +IV++AL +P + IA NAG +GS+V  KVL ++ + +G++A TG Y +L++ GIIDP KVVR  +++ASSVA   + ++ +V E+ +     PAMPA   M
Sbjct:  390 KERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGLRT--ENDDQKTGVEIVRKALSWPARQIAINAGEDGSIVVGKVLDNEQYSFGFDAQTGEYSNLVSKGIIDPAKVVRIAVQNASSVAGLLITTEAMVAELPKKATAGPAMPAAPGM 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_MYXXD (60 kDa chaperonin 2 OS=Myxococcus xanthus (strain DK 1622) GN=groL2 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.376e-26
Identity = 68/155 (43.87%), Postives = 92/155 (59.35%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RVEDALNAT+AA             +R    +D ++ +     EK G DI++RA+  PL+ I  N G+ GSVV  KV  S    +G+NAATG YEDL+AAG+IDP KV R  L++A+SV+   L ++ +V E  + E  +PAG  M   G
Sbjct:  389 KEKKARVEDALNATRAAVEEGVVPGGGVAYIRCLKALDGLQLS---GGEKFGVDIIRRAVEEPLRQIVGNGGLEGSVVVNKVKESSG-PFGFNAATGTYEDLLAAGVIDPAKVSRTALQNAASVSSLMLTTEAMVAERPKEEKDLPAGGGMGGMG 539          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_RHOPS (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisB5) GN=groL1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.376e-26
Identity = 66/157 (42.04%), Postives = 96/157 (61.15%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE+K RV+DA++AT+AA            LLR S ++  IK    ND++K G +IV++AL  P + IA NAG +GSV+  KVL  D + YG+++ TG Y DL+  GIIDPTKVVR  +++A+SVA   + ++ +V E+ +   A   G P    G G
Sbjct:  390 KERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKRIKT--QNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKVLEKDQYNYGFDSQTGEYGDLVKKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGGA-AGGMPPGGGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_EUBR3 (60 kDa chaperonin OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=groL PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.328e-26
Identity = 69/148 (46.62%), Postives = 90/148 (60.81%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 446
            KE KLR+EDALNAT+AA             +  S KV  + +TL+ DE K GA ++ +AL  PL  IA NAG+ G+V+  KV  S     G+NAAT  Y D++  GI+DP KV R  L++A+SVA T L ++  V  IKE  PAMPAG
Sbjct:  388 KEAKLRMEDALNATRAAVEEGIIAGGGSAYIHASKKVAELVDTLEGDE-KTGAKVILKALEAPLYYIAANAGLEGAVIINKVKESAPGT-GFNAATEEYVDMVDNGILDPVKVTRSALQNATSVASTLLTTESAVATIKEDTPAMPAG 533          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_DESVM (60 kDa chaperonin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=groL PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.328e-26
Identity = 64/146 (43.84%), Postives = 92/146 (63.01%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 440
            KEKK RVEDALNAT+AA             +R+S  +D +K    +D+E  G +I++RA+  PL+ I+ NAG  GS+V EKV    +  +G+NAA+G +EDL+ AG+IDP KV R  L++A+SVA   L ++C + E  E +  MP
Sbjct:  390 KEKKDRVEDALNATRAAVEEGIVPGGGTAYIRISRVLDDVKPA--DDDEAAGVNIIRRAIEEPLRQISSNAGYEGSIVVEKVRDGKDG-FGFNAASGEFEDLIKAGVIDPKKVTRIALQNAASVASLLLTTECAIAEKPEAKKDMP 532          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CUPTR (60 kDa chaperonin OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=groL PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.328e-26
Identity = 69/150 (46.00%), Postives = 90/150 (60.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAG 446
            KEKK RVEDAL+AT+AA            LLR  + + A++   DN ++  G  IV RA+  PL+ I  NAG   SVV  KV+    + YGYNAA+G Y DL+  G++DPTKV R  L++A+SVA   L +DC V E   +E  PAMP G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALLRARAAISALQG--DNADQNAGIKIVLRAMEEPLRQIVLNAGEEASVVVAKVIEGKGN-YGYNAASGEYGDLVEMGVLDPTKVTRTALQNAASVASLMLTTDCAVAETPKEESAPAMPGG 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BACFO (60 kDa chaperonin OS=Bacteroides forsythus GN=groL PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 8.328e-26
Identity = 68/155 (43.87%), Postives = 91/155 (58.71%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RV+DAL+AT+AA             LR    ++ +K   +N++E  G +IVKRA+  PL+ I  NAG  G+VV +KV       +GYNA T  YEDL  AG++DP KV R  LE+A+S+A  FL ++CVV + KE  PA P    M   G
Sbjct:  390 KEKKDRVDDALHATRAAIEEGTVPGGGVAYLRAIPALEGLKG--ENEDETTGIEIVKRAIEEPLRQIVNNAGKEGAVVVQKVKEGTG-AFGYNARTDVYEDLSEAGVVDPAKVTRIALENAASIAGMFLTTECVVADKKEEAPAPPMNPGMGGMG 541          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_METB66.376e-2645.0060 kDa chaperonin OS=Methanoregula boonei (strain ... [more]
CH60_DICDI6.376e-2648.3060 kDa heat shock protein, mitochondrial OS=Dictyo... [more]
CH603_RHIL36.376e-2642.8660 kDa chaperonin 3 OS=Rhizobium leguminosarum bv.... [more]
CH603_BRAJA6.376e-2640.9160 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN... [more]
CH602_MYXXD6.376e-2643.8760 kDa chaperonin 2 OS=Myxococcus xanthus (strain ... [more]
CH601_RHOPS6.376e-2642.0460 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH60_EUBR38.328e-2646.6260 kDa chaperonin OS=Eubacterium rectale (strain A... [more]
CH60_DESVM8.328e-2643.8460 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH60_CUPTR8.328e-2646.0060 kDa chaperonin OS=Cupriavidus taiwanensis (stra... [more]
CH60_BACFO8.328e-2643.8760 kDa chaperonin OS=Bacteroides forsythus GN=groL... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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