CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_SYNPX (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH8102) GN=groL2 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.328e-26
Identity = 68/157 (43.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE--PAMPAGNPMDNSG 467
            K +KLR+EDALNAT+AA           TLL+L+  ++ + E L+ D+ + G +I++RAL  P+  IA NAG NG VV E + +S     G+NA TG YEDLMAAGI+D  KVVR  ++ A S+A   + ++ V+ +  EPE  P    G+PM   G
Sbjct:  388 KNRKLRIEDALNATRAAIEEGIVPGGGTTLLQLADGLNGLVEQLEGDQ-RTGVEILQRALVAPVHHIATNAGHNGDVVIEAMRNSGQ---GFNALTGTYEDLMAAGIVDAAKVVRLAVQDAVSIASLLITTEVVIADKPEPEAPPVDGGGDPMGGMG 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_RHOP2 (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain HaA2) GN=groL2 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.328e-26
Identity = 62/150 (41.33%), Postives = 94/150 (62.67%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KE+K RV+DA++AT+AA            LLR S ++  IK    ND++K G +IV++AL  P + IA NAG +GSV+  KVL  D + YG+++ TG Y D++  GIIDPTKVVR  +++A+SVA   + ++ ++ E+ +   A   G P
Sbjct:  390 KERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKRIKTA--NDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKVLEKDQYNYGFDSQTGEYGDMVKKGIIDPTKVVRAAIQNAASVAALLITTEAMIAELPKKGGAGAGGMP 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_SYNSC (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9605) GN=groL1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.328e-26
Identity = 68/157 (43.31%), Postives = 96/157 (61.15%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA--GNPMDNSG 467
            K +KLR+EDALNAT+AA           TLL+L+  +DA+  +L+ D+ + G +IV+RAL  P+  IA NAG NG VV   + SS     G+NA +G YEDLMAAGI+D  KVVR  ++ + S+A   + ++ V+ +  EP    PA  G+PM   G
Sbjct:  388 KNRKLRIEDALNATRAAVEEGIVAGGGSTLLQLADSLDALASSLNGDQ-RTGVEIVQRALTAPIHQIATNAGQNGDVVIAGMRSSGQ---GFNALSGVYEDLMAAGIVDAAKVVRLAVQDSISIASLLITTEVVIADKPEPPAPAPAGDGDPMGGMG 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_THEPX (60 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groL PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.088e-25
Identity = 65/146 (44.52%), Postives = 91/146 (62.33%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 440
            KEKK R+EDAL ATKAA            LL +   V  + ++LD D  K GA IV RAL  P++ IA NAGV+GSV+ EK+ ++ +  +GY+A    + D+  AGI+DPTKV R  L++A+S+A   L ++ VVV++ E   AMP
Sbjct:  388 KEKKHRIEDALAATKAAVEEGIVPGGGIALLNVIEDVQKVVDSLDGDF-KTGAKIVLRALEEPVRQIAANAGVDGSVIVEKIKAAKDPNFGYDAYKEEFTDMFKAGIVDPTKVTRTALQNAASIASMILTTEAVVVDVPEKNTAMP 532          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_THEP3 (60 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groL PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.088e-25
Identity = 65/146 (44.52%), Postives = 91/146 (62.33%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 440
            KEKK R+EDAL ATKAA            LL +   V  + ++LD D  K GA IV RAL  P++ IA NAGV+GSV+ EK+ ++ +  +GY+A    + D+  AGI+DPTKV R  L++A+S+A   L ++ VVV++ E   AMP
Sbjct:  388 KEKKHRIEDALAATKAAVEEGIVPGGGIALLNVIEDVQKVVDSLDGDF-KTGAKIVLRALEEPVRQIAANAGVDGSVIVEKIKAAKDPNFGYDAYKEEFTDMFKAGIVDPTKVTRTALQNAASIASMILTTEAVVVDVPEKNTAMP 532          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_RHOS1 (60 kDa chaperonin OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=groL PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.088e-25
Identity = 65/150 (43.33%), Postives = 93/150 (62.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KE+K RV+DALNAT+AA            L++    +D +  T +N ++  G  IV+RAL  PL+ IA+NAGV+GSVV+ KV  S+   +G+NA T  Y D+   G+IDP KVVR  LE A+SVA   + ++ ++ +  +PEP  PAG P
Sbjct:  390 KERKDRVDDALNATRAAVQEGIVVGGGVALIQGGKALDGL--TGENPDQNAGITIVRRALEAPLRQIAQNAGVDGSVVAGKVRESNEKSFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVASLLITTEAMIAD--KPEPKSPAGGP 535          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_RALEJ (60 kDa chaperonin OS=Ralstonia eutropha (strain JMP134) GN=groL PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.088e-25
Identity = 69/150 (46.00%), Postives = 90/150 (60.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAG 446
            KEKK RVEDAL+AT+AA            LLR  + + A+  T +N ++  G  IV RA+  PL+ I  NAG   SVV  KV+    + YGYNAA+G Y DL+  G++DPTKV R  L++A+SVA   L +DC V E   +E  PAMP G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALLRARAAISAL--TGENPDQNAGIKIVLRAMEEPLRQIVLNAGEEASVVVAKVIEGKGN-YGYNAASGEYGDLVEMGVLDPTKVTRTALQNAASVASLMLTTDCAVAETPKEESAPAMPGG 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH603_RHOBA (60 kDa chaperonin 3 OS=Rhodopirellula baltica GN=groL3 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.088e-25
Identity = 75/156 (48.08%), Postives = 99/156 (63.46%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGY 470
            KEKK RVEDAL+AT+AA            LLR S KV A  +TL  D++ VG +IV RA   PL +I++NAG +G +V EKVL+   ++ GYNA T  YEDL+ +G+IDPTKV R  L +A+SVA   L SD +V E  +PE +  AG+  D+  Y
Sbjct:  389 KEKKARVEDALHATRAAVEEGILPGGGVALLRASGKVKAA-DTL-TDDQLVGYNIVLRACRAPLTMISENAGQDGGIVCEKVLAMKGNE-GYNALTDVYEDLVKSGVIDPTKVTRTALGNAASVATLLLTSDALVAE--KPEKSGKAGHGGDHDMY 539          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_SYNPW (60 kDa chaperonin 1 OS=Synechococcus sp. (strain WH7803) GN=groL1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.088e-25
Identity = 69/156 (44.23%), Postives = 93/156 (59.62%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA-MPAGNPMDNSG 467
            K +KLR+EDALNAT+AA           TL++L+  +D +   L  D+ + G +IV RAL  PL+ IA NAG NG VV E+V  S     G+NA TG YE+L+ AGI+D  KVVR  L+ A S+A   + ++ VV +  EP  A  P G+PM   G
Sbjct:  388 KNRKLRIEDALNATRAAVEEGIVAGGGSTLIQLAGSLDGLANQLHGDQ-RTGVEIVHRALSAPLRQIAINAGANGDVVVEQVQRSGQ---GFNALTGGYENLLEAGILDAAKVVRLGLQDAVSIASLLITTEVVVADKPEPPAAPAPGGDPMGGMG 539          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_RHOSH (60 kDa chaperonin 1 OS=Rhodobacter sphaeroides GN=groL1 PE=1 SV=4)

HSP 1 Score: 117.087 bits (292), Expect = 1.088e-25
Identity = 65/150 (43.33%), Postives = 93/150 (62.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KE+K RV+DALNAT+AA            L++    +D +  T +N ++  G  IV+RAL  PL+ IA+NAGV+GSVV+ KV  S+   +G+NA T  Y D+   G+IDP KVVR  LE A+SVA   + ++ ++ +  +PEP  PAG P
Sbjct:  390 KERKDRVDDALNATRAAVQEGIVVGGGVALIQGGKALDGL--TGENPDQNAGITIVRRALEAPLRQIAQNAGVDGSVVAGKVRESNEKSFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVASLLITTEAMIAD--KPEPKSPAGGP 535          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_SYNPX8.328e-2643.3160 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
CH602_RHOP28.328e-2641.3360 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH601_SYNSC8.328e-2643.3160 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH60_THEPX1.088e-2544.5260 kDa chaperonin OS=Thermoanaerobacter sp. (strai... [more]
CH60_THEP31.088e-2544.5260 kDa chaperonin OS=Thermoanaerobacter pseudethan... [more]
CH60_RHOS11.088e-2543.3360 kDa chaperonin OS=Rhodobacter sphaeroides (stra... [more]
CH60_RALEJ1.088e-2546.0060 kDa chaperonin OS=Ralstonia eutropha (strain JM... [more]
CH603_RHOBA1.088e-2548.0860 kDa chaperonin 3 OS=Rhodopirellula baltica GN=g... [more]
CH601_SYNPW1.088e-2544.2360 kDa chaperonin 1 OS=Synechococcus sp. (strain W... [more]
CH601_RHOSH1.088e-2543.3360 kDa chaperonin 1 OS=Rhodobacter sphaeroides GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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