CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_PROMS (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain AS9601) GN=groL2 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.855e-25
Identity = 70/162 (43.21%), Postives = 100/162 (61.73%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDND---EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE-PEPAMPAGNPMDNSGYGY 476
            K+KKLR+EDA+NATKAA           TL  LS     +KE  D +   EE +GA+IV+ +L  PL  IA+NAG NG+V++E V +   +  G+NAATG Y D+ +AGI+DP KV R  L++A+S+A   L ++C+V ++ E  + A PAG P     + Y
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLSP---ILKEWADKNLEGEELIGANIVEASLTAPLMRIAENAGSNGAVIAENVKTKPFND-GFNAATGEYVDMSSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDSAAPAGAPGMGGDFDY 545          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_PROM2 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9215) GN=groL2 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.855e-25
Identity = 70/162 (43.21%), Postives = 100/162 (61.73%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDND---EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE-PEPAMPAGNPMDNSGYGY 476
            K+KKLR+EDA+NATKAA           TL  LS     +KE  D +   EE +GA+IV+ +L  PL  IA+NAG NG+V++E V +   +  G+NAATG Y D+ +AGI+DP KV R  L++A+S+A   L ++C+V ++ E  + A PAG P     + Y
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLSP---ILKEWADKNLKGEELIGANIVEASLTAPLMRIAENAGSNGAVIAENVKTKPFND-GFNAATGEYVDMSSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDSASPAGAPGMGGDFDY 545          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_PROM0 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9301) GN=groL2 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.855e-25
Identity = 70/162 (43.21%), Postives = 100/162 (61.73%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDND---EEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE-PEPAMPAGNPMDNSGYGY 476
            K+KKLR+EDA+NATKAA           TL  LS     +KE  D +   EE +GA+IV+ +L  PL  IA+NAG NG+V++E V +   +  G+NAATG Y D+ +AGI+DP KV R  L++A+S+A   L ++C+V ++ E  + A PAG P     + Y
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLSP---ILKEWADKNLEGEELIGANIVEASLTAPLMRIAENAGSNGAVIAENVKTKPFND-GFNAATGEYVDMSSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDSAAPAGAPGMGGDFDY 545          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_RHOPB (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisB18) GN=groL1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.855e-25
Identity = 62/157 (39.49%), Postives = 97/157 (61.78%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE+K RV+DA++AT+AA            LLR S ++  IK    ND++K G +IV++AL +P + IA NAG +GSV+  K+L  D + YG+++ +G Y D++  GIIDPTKVVR  +++A+SVA   + ++ ++ E+ +   A   G P    G G
Sbjct:  390 KERKDRVDDAMHATRAAVEEGILPGGGVALLRASEQLKRIKT--QNDDQKTGVEIVRKALSWPARQIAINAGEDGSVIVGKILEKDQYSYGFDSQSGEYGDMVKKGIIDPTKVVRAAIQNAASVAALLITTEAMIAELPKKGNA-GGGMPPGGGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_RHOP5 (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisA53) GN=groL1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.855e-25
Identity = 66/156 (42.31%), Postives = 94/156 (60.26%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 467
            KEKK RVEDALNAT+AA            LLR    V  I    DN + + G +IV +AL  P++ IA+NAGV GS+V  K+L + +  +G++A T  Y D++A GI+DP KVVR  L+ A+SV+   + ++ +V E+ ++  PAMP G  M   G
Sbjct:  390 KEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINN--DNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMLAKGIVDPAKVVRTALQDAASVSALLVTTEAMVAELPRDAAPAMPGGGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_PROMS (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain AS9601) GN=groL1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.855e-25
Identity = 68/158 (43.04%), Postives = 94/158 (59.49%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE---PAMPAGNPMDNSG 467
            K KKLR+ED+LNATKAA           TL+ +S  +  + ET  +D+ + G +IVK AL  P K IAKNAG NG VV  ++   +    G+NA +G YEDL  +GI+DPTKV+R  L+ + S+A   L ++  + +I EPE   P  P G+PM   G
Sbjct:  388 KYKKLRIEDSLNATKAAIEEGVVSGGGQTLIEISDDLLNLSET-SSDDLRTGINIVKEALLEPTKQIAKNAGFNGDVVVAEIQRLNK---GFNANSGQYEDLKDSGILDPTKVIRLALQDSVSIAAMLLTTEVAMADIPEPEAAAPGGPGGDPMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_ZYMMO (60 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.423e-25
Identity = 64/150 (42.67%), Postives = 96/150 (64.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE--PEPAMPAG 446
            KE+K RV+DAL+AT+AA            LL  +  ++ +     N++++ G DIV+RAL  P++ IA+NAG +G+VV+ K++  ++ K G+NA T  YEDL A G+IDPTKVVR  L+ A+SVA   + ++  V ++ E  P PAMP G
Sbjct:  390 KERKDRVDDALHATRAAVQEGIVPGGGTALLYATKTLEGLNGV--NEDQQRGIDIVRRALQAPVRQIAQNAGFDGAVVAGKLIDGNDDKIGFNAQTEKYEDLAATGVIDPTKVVRTALQDAASVAGLLITTEAAVGDLPEDKPAPAMPGG 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_LACHE (60 kDa chaperonin OS=Lactobacillus helveticus GN=groL PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.423e-25
Identity = 69/155 (44.52%), Postives = 99/155 (63.87%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIK-ETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP---AGNPM 455
            KE++ R+EDALN+T+AA            L+ +   V  +K ET D   E+ G +IV RAL  P++ IA+NAG +GSV+ +K+   +N + GYNAAT  +E+++ AGIIDPTKV R  L++A+S+A   L ++ VV EI EP+ A P   AG PM
Sbjct:  388 KERRYRIEDALNSTRAAVDEGYVAGGGTALVNVEKAVREVKGETTD---EQTGINIVLRALSAPVRQIAENAGKDGSVILDKLEHQEN-EIGYNAATDKWENMVDAGIIDPTKVTRTALQNAASIAALLLTTEAVVAEIPEPKQAAPQGGAGAPM 538          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_DICT6 (60 kDa chaperonin OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=groL PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.423e-25
Identity = 65/150 (43.33%), Postives = 92/150 (61.33%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KEKK R+EDAL+ATKAA            LLR    +D +K  +DN++E++G +IV+R+L  PLKLIA NAG  GS+++EKV   D    GY+AA   + ++  AGI+DP KV R  L++A+S+A   L ++ +V E  E E   P   P
Sbjct:  390 KEKKHRIEDALSATKAAVEEGIVPGGGVALLRTIKALDDVK--VDNEDERIGVEIVRRSLDVPLKLIANNAGKEGSIIAEKVKEMDG-PMGYDAANDRFVNMFEAGIVDPAKVTRSALQNAASIAALVLTTEGLVAEKPEKEKQTPPPPP 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CHLPD (60 kDa chaperonin OS=Chlorobium phaeobacteroides (strain DSM 266) GN=groL PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.423e-25
Identity = 67/158 (42.41%), Postives = 95/158 (60.13%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGV-NGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R    +D      DN+++K G +I++RAL  PL+ I  N G  +G+VV EKV + +   +G+NA T  YE+L+ AG++DPTKV R  LE+A+SVA   L ++  + +IKE +  MPA  P    G G
Sbjct:  390 KEKKARVEDALHATRAAVQEGIVVGGGVALIRAIKGLD--NAVADNEDQKTGIEIIRRALEEPLRQIVANTGTTDGAVVLEKVKNGEGD-FGFNARTEQYENLVEAGVVDPTKVTRSALENAASVASILLTTEAAITDIKEEKSDMPAMPPGGMGGMG 544          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_PROMS1.855e-2543.2160 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_PROM21.855e-2543.2160 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_PROM01.855e-2543.2160 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH601_RHOPB1.855e-2539.4960 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH601_RHOP51.855e-2542.3160 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH601_PROMS1.855e-2543.0460 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_ZYMMO2.423e-2542.6760 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=... [more]
CH60_LACHE2.423e-2544.5260 kDa chaperonin OS=Lactobacillus helveticus GN=g... [more]
CH60_DICT62.423e-2543.3360 kDa chaperonin OS=Dictyoglomus thermophilum (st... [more]
CH60_CHLPD2.423e-2542.4160 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
back to top