CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:234..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH604_SINMW (60 kDa chaperonin 4 OS=Sinorhizobium medicae (strain WSM419) GN=groL4 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 65/157 (41.40%), Postives = 91/157 (57.96%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGN-PMDNSGY 470
            KEKK R++DALNAT+AA            LLR  S + ++  T +N E   G  IV++AL  P++ IA NAGV GS+V  K++ S +   G++A T  Y D++ AGI+DP KVVR  L  A S+A   + ++ +V +I E   A  AGN  M   GY
Sbjct:  390 KEKKDRIDDALNATRAAVEEGIVAGGGVALLRAKSALASL--TGENPEITAGIAIVRKALEAPIRQIADNAGVEGSIVIGKLVDSSDQNQGFDAQTETYVDMIKAGIVDPAKVVRTALRDAGSIAALLITAEAMVADIPEKNAAQNAGNGAMGGRGY 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_BURPS (60 kDa chaperonin 2 OS=Burkholderia pseudomallei GN=groL2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 67/151 (44.37%), Postives = 89/151 (58.94%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNP 452
            KEKK RV+DAL+AT+AA            L+R+   + A+     N ++K G  IV RAL  PL+ I  NAG   SVV   V +   + YGYNAATG Y DL+ +G++DPTKV R  L++A+S+A   L +D  V E  K+  PA PAG P
Sbjct:  390 KEKKDRVDDALHATRAAVEEGIVPGGGVALIRVKQAIAALAGA--NADQKAGISIVLRALEEPLRQIVANAGEEASVVVATVAAGQGN-YGYNAATGEYGDLVESGVLDPTKVTRTALQNAASIAGLLLTTDATVHEAPKDAPPAAPAGVP 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_BURP1 (60 kDa chaperonin 2 OS=Burkholderia pseudomallei (strain 1710b) GN=groL2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 67/151 (44.37%), Postives = 89/151 (58.94%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNP 452
            KEKK RV+DAL+AT+AA            L+R+   + A+     N ++K G  IV RAL  PL+ I  NAG   SVV   V +   + YGYNAATG Y DL+ +G++DPTKV R  L++A+S+A   L +D  V E  K+  PA PAG P
Sbjct:  390 KEKKDRVDDALHATRAAVEEGIVPGGGVALIRVKQAIAALAGA--NADQKAGISIVLRALEEPLRQIVANAGEEASVVVATVAAGQGN-YGYNAATGEYGDLVESGVLDPTKVTRTALQNAASIAGLLLTTDATVHEAPKDAPPAAPAGVP 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_BURPS (60 kDa chaperonin 1 OS=Burkholderia pseudomallei GN=groL1 PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 65/157 (41.40%), Postives = 88/157 (56.05%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R  + +  +  T  N ++  G  IV RA+  PL+ I  N G   SVV   V +   + YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIAGL--TGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGN-YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_BURP6 (60 kDa chaperonin 1 OS=Burkholderia pseudomallei (strain 668) GN=groL1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 65/157 (41.40%), Postives = 88/157 (56.05%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R  + +  +  T  N ++  G  IV RA+  PL+ I  N G   SVV   V +   + YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIAGL--TGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGN-YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_SULDN (60 kDa chaperonin OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=groL PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 68/157 (43.31%), Postives = 90/157 (57.32%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DAL+ATKAA            L+R  +KV   K  L  D+ K+G +I+ RA+  PLK IA NAG +  VV   V  + N   G+NAATG Y D+  AGIIDP KV R  L +A+S+A   L ++  + E+ E + +MP     D SG G
Sbjct:  389 KEKKDRVDDALSATKAAVEEGIVIGGGAALVRAGAKV---KLDLSGDQ-KIGCEIILRAIKAPLKQIATNAGYDAGVVVNAVEGATNENIGFNAATGEYVDMFEAGIIDPFKVGRVALTNATSIASLLLTTEAAIYELPEEKSSMP-----DMSGMG 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_SHESH (60 kDa chaperonin OS=Shewanella sediminis (strain HAW-EB3) GN=groL PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 64/157 (40.76%), Postives = 92/157 (58.60%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R++SK+  ++  + N+++K G  I  RA+  PL+ IA NAG  GSVV+  V +   + YGYNA    Y D++  GI+DPTKV R  L+ A+S+A   + ++ +V E+KE  PA   G      G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGVVAGGGVALVRVASKIAEVE--VINEDQKHGVVIALRAMEAPLRQIAANAGEEGSVVANNVKNGSGN-YGYNAGNDTYGDMLEMGILDPTKVTRSALQFAASIAGLMITTEAMVGEVKEDAPAGDMGGMGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_SHEHH (60 kDa chaperonin OS=Shewanella halifaxensis (strain HAW-EB4) GN=groL PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 63/155 (40.65%), Postives = 90/155 (58.06%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            L+R++SK+  ++    N+++K G  I  RA+  PL+ IA NAG  GSVV+  V +   + YGYNA    Y D++  GI+DPTKV R  L+ ASS+A   + ++C+V ++KE    M     M   G
Sbjct:  390 KEKKARVEDALHATRAAVEEGVVAGGGVALVRVASKIGEVEVL--NEDQKHGVIIALRAMEAPLRQIATNAGEEGSVVANNVKNGTGN-YGYNAGNDTYGDMLEMGILDPTKVTRSALQFASSIAGLMITTECMVADVKEDAADMGGMGGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_PORYE (60 kDa chaperonin, chloroplastic OS=Porphyra yezoensis GN=groL PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 62/137 (45.26%), Postives = 89/137 (64.96%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE 413
            K+KKLR+ DA+NATKAA           T + +SS++    +    ++E +GA IV+RA+ YPL+ IA NAG NG+V+ EKV S D H  GY+AA GN  ++   GIIDP KV R  L++A+S+A   L ++C+VV+
Sbjct:  389 KDKKLRLGDAINATKAAIEEGIVPGGGATNVHISSELFTWAKNNLVEDELIGALIVERAVTYPLRRIAFNAGDNGAVIVEKVKSHDFH-IGYDAANGNIVNMYDRGIIDPAKVARSALQNAASIAAMVLTTECIVVD 524          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_NITEU (60 kDa chaperonin OS=Nitrosomonas europaea GN=groL PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 69/149 (46.31%), Postives = 86/149 (57.72%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAG 446
            KEKK RVEDAL+AT+AA            LLR  + V  IK   DN ++  G  IV RA+  PL+ I  N G   SVV  KV       +GYNAATG Y DL+A G++DPTKV R  L++A+SVA   L +D +V E+ KE  P   AG
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALLRTINAVSKIKG--DNHDQDSGIKIVLRAMEEPLRQIVTNCGDEASVVVNKVKEGQG-TFGYNAATGEYGDLVAMGVLDPTKVTRSALQNAASVAGLILTTDAMVAELPKEDSPGAGAG 535          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH604_SINMW1.330e-2341.4060 kDa chaperonin 4 OS=Sinorhizobium medicae (stra... [more]
CH602_BURPS1.330e-2344.3760 kDa chaperonin 2 OS=Burkholderia pseudomallei G... [more]
CH602_BURP11.330e-2344.3760 kDa chaperonin 2 OS=Burkholderia pseudomallei (... [more]
CH601_BURPS1.330e-2341.4060 kDa chaperonin 1 OS=Burkholderia pseudomallei G... [more]
CH601_BURP61.330e-2341.4060 kDa chaperonin 1 OS=Burkholderia pseudomallei (... [more]
CH60_SULDN1.736e-2343.3160 kDa chaperonin OS=Sulfurimonas denitrificans (s... [more]
CH60_SHESH1.736e-2340.7660 kDa chaperonin OS=Shewanella sediminis (strain ... [more]
CH60_SHEHH1.736e-2340.6560 kDa chaperonin OS=Shewanella halifaxensis (stra... [more]
CH60_PORYE1.736e-2345.2660 kDa chaperonin, chloroplastic OS=Porphyra yezoe... [more]
CH60_NITEU1.736e-2346.3160 kDa chaperonin OS=Nitrosomonas europaea GN=groL... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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