CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:234..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_NEIFL (60 kDa chaperonin OS=Neisseria flavescens GN=groL PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 64/155 (41.29%), Postives = 88/155 (56.77%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            LLR  + ++ +     N +++ G  IV RA+  PL+ I   AG   SVV  KVL    + YGY A +G Y D++  G++DP KV R  L+HA+S+A   L +DC++ EI E +PAMP    M   G
Sbjct:  390 KEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHT--GNADQEAGVQIVLRAVESPLRQIVAKAGGEPSVVVNKVLEGKGN-YGYKAGSGEYGDMIEMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPERKPAMPDMGGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_METVS (60 kDa chaperonin OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=groL PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 61/151 (40.40%), Postives = 97/151 (64.24%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 455
            KEKKLR+EDALNATKAA            L+ +  ++++ + +    EE++G +IVK+AL  PLK IA+NAG+ GS+V EKV ++++   G++AA   Y D++ +GIIDP KV R  L++++SVA   L ++ ++V+  + E +     PM
Sbjct:  388 KEKKLRIEDALNATKAAIEEGIVSGGGTVLIEILKEMESFELS---GEERIGVNIVKKALTAPLKQIAENAGLEGSIVVEKVKNAES-GIGFDAAKEEYVDMIKSGIIDPAKVTRSALQNSASVAALVLTTEAIIVDKPKKEESDTPNMPM 534          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_DESRM (60 kDa chaperonin OS=Desulfotomaculum reducens (strain MI-1) GN=groL PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 67/155 (43.23%), Postives = 95/155 (61.29%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKKLR++DALNAT+AA             + + + +D+++  L+ D  K G DIVKRAL  PL+ IA NAG+ GSVV EKV ++     G+NA +  Y D++AAGIIDP KV R  L++A+S+A   L ++ +V +    +P   A NPM   G
Sbjct:  389 KEKKLRIDDALNATRAAVEEGIVPGGGSAFVNIITTLDSVQ--LEGDA-KTGVDIVKRALEEPLRQIANNAGLEGSVVVEKVRTTGK---GFNAMSEEYVDMIAAGIIDPAKVTRSALQNAASIAAMVLTTETLVAD----KPEKDAPNPMAGMG 533          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CLODI (60 kDa chaperonin OS=Clostridium difficile GN=groL PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 62/152 (40.79%), Postives = 95/152 (62.50%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMD 458
            KE+KLR+EDALNAT+AA             + +   +  + E+L+  E K+GA IVK+AL  PL+ IA NAG+ G+V+ + V++S+    G++A    Y +++ AGI+DPTKV R  L++A+S+A TFL ++  V ++ E E A   G  MD
Sbjct:  388 KERKLRIEDALNATRAAVEEGIVAGGGTAFVSVIPAIGTLIESLEG-EVKLGAQIVKKALEEPLRQIAINAGLEGAVIVQNVVNSEAET-GFDALNEKYVNMIEAGIVDPTKVSRSALQNAASIASTFLTTEAAVADLPEKEDAGMPGTGMD 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CAMC5 (60 kDa chaperonin OS=Campylobacter curvus (strain 525.92) GN=groL PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 69/157 (43.95%), Postives = 92/157 (58.60%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE--PEPAMPAGNPMDNSG 467
            KEKK RV+DAL+AT+AA            L+  S +V   K  L  DE  +GA+IV+RAL  PL+ IA+NAG +  VV+  V  S +  YG+NA +G Y ++  AGIIDP KV R  L++A SVA   L ++  + E+KE  P PAMP    M   G
Sbjct:  389 KEKKDRVDDALSATRAAVEEGIVVGGGSALILASKRV---KLDLSGDEA-IGAEIVRRALRAPLRQIAENAGFDAGVVTNAVEVSSDVNYGFNAVSGEYVNMFEAGIIDPVKVERVALQNAVSVASLLLTTEATISELKEDKPMPAMPDMGGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CAEEL (Chaperonin homolog Hsp-60, mitochondrial OS=Caenorhabditis elegans GN=hsp-60 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 66/157 (42.04%), Postives = 88/157 (56.05%), Query Frame = 3
Query:    6 EKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSGYG 473
            EKK RV DAL AT+AA            LLR  + +   K    N+++++G +IVK+AL  P+  I KNAG+  S + ++V  + N  YGY+A  G + D+  AGIIDPTKVVR  L+ AS VA     ++CVV EI KE     PAG      G G
Sbjct:  407 EKKDRVTDALCATRAAVEEGIVPGGGVALLRSLTALKNYKAA--NEDQQIGVNIVKKALTQPIATIVKNAGLEPSSIIDEVTGNSNTSYGYDALNGKFVDMFEAGIIDPTKVVRTALQDASGVASLLATTECVVTEIPKEEAVGGPAGGMGGMGGMG 561          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60B_ARATH (Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 67/156 (42.95%), Postives = 87/156 (55.77%), Query Frame = 3
Query:    6 EKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            EKK RV DALNATKAA            LL  S +++ +     N ++K+G  I++ AL  P+  IA NAGV G+VV  K+L  DN   GY+AA G Y D++ AGIIDP KV+R  L  A+SV+     ++ VV EI   E A P    M   G G
Sbjct:  422 EKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELEKLSTA--NFDQKIGVQIIQNALKTPVYTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAASVSSLLTTTEAVVTEIPTKEVASPG---MGGGGMG 572          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH603_RHIME (60 kDa chaperonin 3 OS=Rhizobium meliloti GN=groL3 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 62/157 (39.49%), Postives = 90/157 (57.32%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGN-PMDNSGY 470
            KEKK R++DALNAT+AA            LLR  S +  + +  DN +   G  IV+RAL  P++ IA NAGV GS+V  K++   +H  G++A T  Y D++ AGI+DP KVVR  L  A S+A   + ++ ++ +I E       GN  +D+ GY
Sbjct:  390 KEKKDRIDDALNATRAAVEEGIVPGGGVALLRAKSALVGLTD--DNADVTAGISIVRRALEAPIRQIADNAGVEGSIVVGKLVDGRDHNQGFDAQTETYVDMIKAGIVDPAKVVRTALRDAGSIASLLITAEAMIADIPERGSPQSTGNGAVDSMGY 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH603_RHILE (60 kDa chaperonin 3 OS=Rhizobium leguminosarum GN=groL3 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 64/157 (40.76%), Postives = 91/157 (57.96%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGN-PMDNSGY 470
            KEKK R++DALNAT+AA            LLR  S +  +  T +N +   G  IV RAL  P++ IA NAG  GS+V  K+  S+NH  G++A T  Y D++ AGI+DP KVVR  L+ A S+A   + ++ ++ +I   + A  AGN  M + GY
Sbjct:  390 KEKKDRIDDALNATRAAVEEGIVPGGGVALLRAKSALTGL--TGENADVTAGISIVLRALEAPIRQIADNAGFEGSIVVGKLAGSNNHNQGFDAQTETYVDMIEAGIVDPAKVVRTALQDAGSIAALLITAEVMIADIPARDSAPAAGNGGMGDMGY 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_STRU0 (60 kDa chaperonin OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=groL PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.268e-23
Identity = 73/158 (46.20%), Postives = 95/158 (60.13%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEP-EPAMPAGNPMDNSGYG 473
            KE KLR+EDALNAT+AA            L+ +  KV A++ T D   E  G +IV RAL  P++ IA NAG  GSVV +K+ +S     G+NAATG++ D++  GIIDP KV R  L++A+SVA   L ++ VV    EP  PAMP G  MD S  G
Sbjct:  388 KEMKLRIEDALNATRAAVEEGIVSGGGTALVTVIDKVAALELTGD---EATGRNIVLRALEEPVRQIAYNAGYEGSVVIDKLKNSPVGT-GFNAATGDWVDMIETGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPAAPAMPGG--MDPSMMG 539          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_NEIFL1.736e-2341.2960 kDa chaperonin OS=Neisseria flavescens GN=groL ... [more]
CH60_METVS1.736e-2340.4060 kDa chaperonin OS=Methanococcus vannielii (stra... [more]
CH60_DESRM1.736e-2343.2360 kDa chaperonin OS=Desulfotomaculum reducens (st... [more]
CH60_CLODI1.736e-2340.7960 kDa chaperonin OS=Clostridium difficile GN=groL... [more]
CH60_CAMC51.736e-2343.9560 kDa chaperonin OS=Campylobacter curvus (strain ... [more]
CH60_CAEEL1.736e-2342.04Chaperonin homolog Hsp-60, mitochondrial OS=Caenor... [more]
CH60B_ARATH1.736e-2342.95Chaperonin CPN60-like 1, mitochondrial OS=Arabidop... [more]
CH603_RHIME1.736e-2339.4960 kDa chaperonin 3 OS=Rhizobium meliloti GN=groL3... [more]
CH603_RHILE1.736e-2340.7660 kDa chaperonin 3 OS=Rhizobium leguminosarum GN=... [more]
CH60_STRU02.268e-2346.2060 kDa chaperonin OS=Streptococcus uberis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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