CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:234..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BACTR (60 kDa chaperonin OS=Bacillus thermoglucosidasius GN=groL PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.962e-23
Identity = 64/150 (42.67%), Postives = 93/150 (62.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KE+KLR+EDALN+T+AA            L+ + +KV AI+   D   E  G  IV RA+  P++ IA+NAG+ GSV+ E+ L S+    G+NAATG + +++ AGI+DPTKV R  L++A+SVA  FL ++ VV +  E      +G P
Sbjct:  388 KERKLRIEDALNSTRAAVEEGIVAGGGTALMNVYNKVAAIEAEGD---EATGVKIVLRAIEEPVRQIAQNAGLEGSVIVER-LKSEKPGIGFNAATGEWVNMIEAGIVDPTKVTRSALQNAASVAAMFLTTEAVVADKPEENKGGNSGMP 533          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH603_BURCM (60 kDa chaperonin 3 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=groL3 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.962e-23
Identity = 66/150 (44.00%), Postives = 87/150 (58.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KEKK RV+DAL+AT+AA            LLR  S   ++K    N ++  G  IV RAL  PL++IA NAG   SVV  KVL    + +GYNAATG Y DL+ AG++DPTKV R  L++A+S+A   L +D  V +  + E    A  P
Sbjct:  390 KEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSTATSLKGA--NSDQDAGIQIVLRALEAPLRVIASNAGDEPSVVIAKVLEGKGN-FGYNAATGEYGDLVEAGVVDPTKVTRTALQNAASIAGLILTTDATVADAPKDEKPAQAPAP 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_SYNJA (60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL2 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.962e-23
Identity = 65/158 (41.14%), Postives = 89/158 (56.33%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 476
            K++KLR+EDA+NATKAA           TL  L   V    +   + +E VGA +V RAL  PL+ IA+NAG NGS+V E+V        GY+A    Y D+  AGI+DP KV R  L++A+S+A   L ++ +VV+  EP+   PAG       Y Y
Sbjct:  388 KDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLMPAVTEWAQANLSGDELVGAMLVARALGAPLRRIAENAGQNGSIVLERV-KEKPFTVGYDAQNDAYVDMFEAGIVDPAKVTRSALQNAASIASMVLTTEAIVVDKPEPKSNKPAGGGGGVDDYDY 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_NITOC (60 kDa chaperonin OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=groL PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.868e-23
Identity = 61/157 (38.85%), Postives = 91/157 (57.96%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R    +  +K    N ++ VG +I +RA+  PL+ I  N+G   SV+  ++   + + YGYNAATG + D++A GI+DPTKV R  L++A+SVA   + ++ ++ E  + E A P G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGVVPGGGVALIRALLGIKDLKGA--NHDQDVGINIARRAMEEPLRQIVNNSGEEASVIVNQIKGGEGN-YGYNAATGEFGDMIAMGILDPTKVSRTALQNAASVAGLMITTEAMIAEAPKDEEASPGGAPGMGGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_IDILO (60 kDa chaperonin OS=Idiomarina loihiensis GN=groL PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.868e-23
Identity = 63/159 (39.62%), Postives = 93/159 (58.49%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA--MPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R +SK+  ++   DN+E+ VG  +  RA+  PL+ IA NAG  GSVV+  V + + + YGYNA    Y D++  GI+DPTKV R  L+ A+SV    + ++ ++ +I + + A  MP G+     G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGVVPGGGVALVRAASKLAELRG--DNEEQNVGIRLALRAMEAPLRQIAMNAGAEGSVVANNVRAGEGN-YGYNAGNDTYGDMLEMGILDPTKVTRSALQFAASVGALMITTEAMIADIPQDDNAGGMPGGDMGGMGGMG 545          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CLOBM (60 kDa chaperonin OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=groL PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.868e-23
Identity = 65/154 (42.21%), Postives = 92/154 (59.74%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE--PAMPAGNPMD 458
            KE+KLR+EDAL ATKAA             + +  K+  +  T D  + K+G DI+++AL  P++ IA NAG  GSV+ EKV +S+    GY+A    Y D++  GI+DPTKV R  L++A+S+A TFL ++  V +I E E  P M  G  MD
Sbjct:  388 KEEKLRIEDALAATKAAVEEGIVPGGGTAYIDIIPKIADL--TSDIIDVKLGIDIIRKALEEPVRQIANNAGAEGSVIIEKVKASEAG-VGYDALNDKYVDMLKTGIVDPTKVTRSALQNAASIASTFLTTEAAVADIPEKENTPPMAPGMGMD 538          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CAMLR (60 kDa chaperonin OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=groL PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.868e-23
Identity = 67/155 (43.23%), Postives = 90/155 (58.06%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RV+DAL+ATKAA            L++  SK+      L  DE  +GA IV+RAL  PL+ IA+NAG +  VV   V +S     G++AA G Y +++ +GIIDP KV R  L +A SVA   L ++  + EIKE +PAMP  + M   G
Sbjct:  389 KEKKDRVDDALSATKAAVEEGIVIGGGAALIKAKSKISL---NLQGDEA-IGAAIVERALRAPLRQIAENAGFDAGVVVNTVENSKEENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSVASMLLTTEATISEIKEDKPAMPDMSGMGGMG 539          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BIFLI (60 kDa chaperonin OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=groL PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.868e-23
Identity = 64/148 (43.24%), Postives = 89/148 (60.14%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLD-NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 443
            KE+K R+EDA+   KAA            L++ ++K +  +       EE  GA IV RA+  P+K IA+NAGV+G VV   V S  + + G+NAAT  YEDL+AAG+ DP KV R  L++A+S+A  FL ++ VV    EP+PA PA
Sbjct:  388 KERKHRIEDAVRNAKAAIEEGLLPGGGVALVQAAAKAEKAEAVTSLTGEEATGAAIVFRAIEAPIKQIAENAGVSGDVVINTVRSLPDGE-GFNAATDTYEDLLAAGVTDPVKVTRSALQNAASIAGLFLTTEAVVANKPEPKPAAPA 534          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_AERHH (60 kDa chaperonin OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=groL PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.868e-23
Identity = 61/156 (39.10%), Postives = 95/156 (60.90%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 467
            KEKK RV+DAL+AT+AA            L+R+++K+  ++   DN+++ VG  +  RA+  PL+ I  NAG   SV++  V + + + +GYNA T  Y D++A GI+DPTKV R  L+ ASS+A   + ++C++ E+ K+  PAMP    M   G
Sbjct:  390 KEKKARVDDALHATRAAVEEGVVAGGGVALVRVAAKLAGLRG--DNEDQNVGIKVALRAMEAPLRQIVINAGEEASVIANAVKNGEGN-FGYNAYTEQYGDMLAMGILDPTKVTRSALQFASSIAGLMITTECMISELPKKDAPAMPDMGGMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_ACTPJ (60 kDa chaperonin OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=groL PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.868e-23
Identity = 64/157 (40.76%), Postives = 89/157 (56.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DAL+AT+AA            L+R +SKV A   T DN+E+ VG  +  RA+  PL+ I  NAG   SVV+  V    N  YGYNA T  Y D++  GI+DPTKV R  L+ A+S+A   + ++C++ ++ + E   PA       G G
Sbjct:  390 KEKKDRVDDALHATRAAVEEGIVPGGGVALVRAASKV-ATTLTGDNEEQNVGIKLALRAMEAPLRQIVTNAGEEASVVARNV-KDGNGNYGYNAGTEQYGDMLEMGILDPTKVTRSALQFAASIAGLMITTECMITDLPKEEKLDPAAAMGGMGGMG 544          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BACTR2.962e-2342.6760 kDa chaperonin OS=Bacillus thermoglucosidasius ... [more]
CH603_BURCM2.962e-2344.0060 kDa chaperonin 3 OS=Burkholderia ambifaria (str... [more]
CH602_SYNJA2.962e-2341.1460 kDa chaperonin 2 OS=Synechococcus sp. (strain J... [more]
CH60_NITOC3.868e-2338.8560 kDa chaperonin OS=Nitrosococcus oceani (strain ... [more]
CH60_IDILO3.868e-2339.6260 kDa chaperonin OS=Idiomarina loihiensis GN=groL... [more]
CH60_CLOBM3.868e-2342.2160 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CAMLR3.868e-2343.2360 kDa chaperonin OS=Campylobacter lari (strain RM... [more]
CH60_BIFLI3.868e-2343.2460 kDa chaperonin OS=Bifidobacterium longum subsp.... [more]
CH60_AERHH3.868e-2339.1060 kDa chaperonin OS=Aeromonas hydrophila subsp. h... [more]
CH60_ACTPJ3.868e-2340.7660 kDa chaperonin OS=Actinobacillus pleuropneumoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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