CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:234..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_LEPBP (60 kDa chaperonin OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=groL PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.598e-23
Identity = 62/148 (41.89%), Postives = 91/148 (61.49%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 446
            KEKK RVEDAL+AT+AA           TLLR    V A+K   D   E+ GA+I+ RAL  P+++I  NAG+ GSV+ E+  +   ++ G+NA T  +EDL+ AG++DP KVVR  L++A+S+    L ++  + +  EP+ A  AG
Sbjct:  389 KEKKARVEDALSATRAAVEEGIVPGGGLTLLRAQDAVKALKLVGD---EQTGANIILRALEEPIRMITSNAGLEGSVIVEQARARKGNE-GFNALTMVWEDLIKAGVVDPAKVVRSALQNAASIGAMILTTEVTITDKPEPKDASGAG 532          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_LEPBA (60 kDa chaperonin OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=groL PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.598e-23
Identity = 62/148 (41.89%), Postives = 91/148 (61.49%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 446
            KEKK RVEDAL+AT+AA           TLLR    V A+K   D   E+ GA+I+ RAL  P+++I  NAG+ GSV+ E+  +   ++ G+NA T  +EDL+ AG++DP KVVR  L++A+S+    L ++  + +  EP+ A  AG
Sbjct:  389 KEKKARVEDALSATRAAVEEGIVPGGGLTLLRAQDAVKALKLVGD---EQTGANIILRALEEPIRMITSNAGLEGSVIVEQARARKGNE-GFNALTMVWEDLIKAGVVDPAKVVRSALQNAASIGAMILTTEVTITDKPEPKDASGAG 532          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_HELMI (60 kDa chaperonin OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=groL PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.598e-23
Identity = 68/150 (45.33%), Postives = 92/150 (61.33%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAG 446
            K+KKLR+EDALNAT+AA            L+ +   +D + ET   DE   G  I++RAL  PL+ IA NAG  GSVV EKV S    + G+NAAT  YED++AAGI+DP KV R  L++A+S+A   L ++ +V +   K+  PAM  G
Sbjct:  388 KDKKLRIEDALNATRAAVEEGIVPGGGTALVSIQKALDNV-ETPAGDEA-TGVAIIRRALEEPLRQIANNAGYEGSVVVEKVKSLPVGQ-GFNAATEVYEDMIAAGIVDPAKVTRSALQNAASIAAMLLTTEAIVADKPEKKDAPAMSPG 534          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CLOCE (60 kDa chaperonin OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=groL PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.598e-23
Identity = 64/151 (42.38%), Postives = 91/151 (60.26%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNP 452
            KEKKLR+EDAL AT+AA             + +  +V  + E+   DE K G  I+ RAL  P++ IA+NAG+ GSV+ EK+ +S+    G++A    Y D++  GI+DP KV R  L++A SVA   L ++ VV +  EPE PA+PAG P
Sbjct:  388 KEKKLRIEDALAATRAAVEEGIVAGGGTAFINVIPEVAKLLESTSGDE-KTGVQIILRALEEPVRQIAENAGLEGSVIVEKIKTSEKGM-GFDALNEKYIDMIEGGIVDPAKVTRSALQNAVSVAAMVLTTESVVADKPEPEAPAVPAGMP 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BUCCC (60 kDa chaperonin OS=Buchnera aphidicola subsp. Cinara cedri GN=groL PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.598e-23
Identity = 62/158 (39.24%), Postives = 92/158 (58.23%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNH-KYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R++ K+  I     N+++ VG  +  RA+  PL+ I  N+G   SVV+  V   D H  YGYNAAT  Y D+++ GI+DPTKV R  L++A+SVA   + ++C+V ++ + E +    N    +G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGVVPGGGVALVRVAEKISRING--QNEDQNVGIRVALRAMEAPLRQIVANSGEEPSVVTNNV--KDGHGNYGYNAATDEYGDMISFGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKDEKSSSELNSAPGNGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BARBK (60 kDa chaperonin OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=groL PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.598e-23
Identity = 63/151 (41.72%), Postives = 93/151 (61.59%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE---PAMPAG 446
            KEKK RV+DALNAT+AA            LLR ++K  +IK    N +++ G  I++RAL  P + IA NAG   +V+  KVL + +  +GYN AT  + DL++ GI+DP KVVR  L++A+S+A   + ++ +V E+ + E   PAMP G
Sbjct:  390 KEKKDRVDDALNATRAAVEEGIVPGGGTALLR-AAKALSIKGK--NPDQEAGIGIIRRALQAPARQIAHNAGEEAAVIVGKVLENCSDTFGYNTATAQFGDLISFGIVDPVKVVRSALQNAASIASLLITTEAMVAEVPKKEAAAPAMPGG 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BACST (60 kDa chaperonin OS=Bacillus stearothermophilus GN=groL PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.598e-23
Identity = 65/150 (43.33%), Postives = 92/150 (61.33%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVV----EIKEPEPAMP 440
            KE+KLR+EDALN+T+AA            L+ + SKV AI+   D   E  G  IV RA+  P++ IA+ AG+ GS++ E+ L ++    G+NAATG + D++ AGI+DPTKV R  L++A+SVA  FL ++ VV     E K   P MP
Sbjct:  388 KERKLRIEDALNSTRAAVEEGIVAGGGTALMNVYSKVAAIEAEGD---EATGVKIVLRAIEEPVRQIAQTAGLEGSIIVER-LKTEKPGIGFNAATGEWVDMIEAGIVDPTKVTRSALQNAASVAAMFLTTEAVVADKPEENKGGNPGMP 533          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BACHD (60 kDa chaperonin OS=Bacillus halodurans GN=groL PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.598e-23
Identity = 64/157 (40.76%), Postives = 93/157 (59.24%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE+KLR+EDALN+T+AA            L+ +   V +I    D   E  G +IV RAL  P++ IA NAG+ GSV+ E+ L  +   +G+NAATG + +++ AGI+DPTKV R  L+HA+SV+  FL ++ V+ +  +PE     G   D  G G
Sbjct:  388 KERKLRIEDALNSTRAAVEEGIVAGGGTALVNVIKAVSSIGAEGD---EATGVNIVLRALEEPVRQIAHNAGLEGSVIVER-LKKEEAGFGFNAATGEWVNMVEAGIVDPTKVTRSALQHAASVSAMFLTTEAVIAD--KPEENEGGGGMPDMGGMG 538          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_SYNFM (60 kDa chaperonin 2 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=groL2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.598e-23
Identity = 69/155 (44.52%), Postives = 92/155 (59.35%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE---IKEPEPAMPAGNPMD 458
            KEKK RVEDALNAT+AA            LLR    + A+++   + E+  G  IV RAL  P++ IA NAG  GSVV ++V       +G+NA T  YEDL AAG+IDPTKVVR  L++A+SVA   L ++ ++ E    ++P PAMP     D
Sbjct:  390 KEKKARVEDALNATRAAVEEGIVPGGGVALLRC---LPALEKLDLHGEDAFGVKIVMRALEEPVRQIANNAGHEGSVVVQQVKQGTG-SHGFNADTEVYEDLSAAGVIDPTKVVRFALQNAASVASLLLTTEAMIAEKPKKQKPAPAMPGAGMED 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_RHOBA (60 kDa chaperonin 2 OS=Rhodopirellula baltica GN=groL2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.598e-23
Identity = 58/142 (40.85%), Postives = 87/142 (61.27%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE 428
            K+ K R+EDAL+AT+AA            L+     V+A K+    DE K+G DIV  AL  P++ IA N G++GSVV ++VL  ++ K G+NA TG Y D++ AG+IDP KVVR  L +A+S+A   L ++ +V   ++ +
Sbjct:  389 KQTKARLEDALHATRAAVEEGILPGGGVALVHCREAVEAAKKKAKGDE-KIGVDIVLGALDAPMRQIADNGGIDGSVVVDEVLQKNDPKIGFNAHTGEYTDMVKAGVIDPVKVVRTALTNAASIAGLLLTTEALVTNFEQED 529          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LEPBP6.598e-2341.8960 kDa chaperonin OS=Leptospira biflexa serovar Pa... [more]
CH60_LEPBA6.598e-2341.8960 kDa chaperonin OS=Leptospira biflexa serovar Pa... [more]
CH60_HELMI6.598e-2345.3360 kDa chaperonin OS=Heliobacterium modesticaldum ... [more]
CH60_CLOCE6.598e-2342.3860 kDa chaperonin OS=Clostridium cellulolyticum (s... [more]
CH60_BUCCC6.598e-2339.2460 kDa chaperonin OS=Buchnera aphidicola subsp. Ci... [more]
CH60_BARBK6.598e-2341.7260 kDa chaperonin OS=Bartonella bacilliformis (str... [more]
CH60_BACST6.598e-2343.3360 kDa chaperonin OS=Bacillus stearothermophilus G... [more]
CH60_BACHD6.598e-2340.7660 kDa chaperonin OS=Bacillus halodurans GN=groL P... [more]
CH602_SYNFM6.598e-2344.5260 kDa chaperonin 2 OS=Syntrophobacter fumaroxidan... [more]
CH602_RHOBA6.598e-2340.8560 kDa chaperonin 2 OS=Rhodopirellula baltica GN=g... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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