CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:234..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_ACICJ (60 kDa chaperonin OS=Acidiphilium cryptum (strain JF-5) GN=groL PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.897e-28
Identity = 65/157 (41.40%), Postives = 102/157 (64.97%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE+K RV+DAL+AT+AA            L R S  ++ +K   DND+++ G DI+++A+  P++ IA+NAG +G+V+S KVL +D++ +G++A +G ++D++ AGIIDPTKVVR  L+ A+SVA   + ++ +V E   PE   PAG      G G
Sbjct:  390 KERKDRVDDALHATRAAVEEGIVPGGGVALARASLAINKLKA--DNDDQRFGIDIIRKAVLAPMRQIAENAGEDGAVISGKVLDNDDYSFGFDAQSGEFKDMVKAGIIDPTKVVRTALQDAASVAGLLITTEAMVAE--RPEKKAPAGGDAGMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_ANAVT (60 kDa chaperonin 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.897e-28
Identity = 69/158 (43.67%), Postives = 96/158 (60.76%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 476
            K+KKLR+EDA+NATKAA           TL  L+ +++    +   DEE  GA IV RAL  PLK IA+NAG NG+V++E+V        G+NAAT  + D+  AGI+DP KV R  L++A+S+A   L ++C+VV+  EP+ A PAG       + Y
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLTPELEVWANSNLKDEELTGALIVARALPAPLKRIAENAGQNGAVIAERV-KEKAFNVGFNAATNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEPKDAAPAGAGAGGGDFDY 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_SULMW (60 kDa chaperonin OS=Sulcia muelleri (strain GWSS) GN=groL PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.162e-27
Identity = 71/157 (45.22%), Postives = 99/157 (63.06%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DAL+AT+AA            L+R    ++ +K  +DN ++  G  IVKR+L  PL+ I  NAG  GSV+  KV    N ++GY+A  G Y+++++ GIIDPTKV R  LE+A+SV+   L ++CV+ EIK+ EPAMP    M NSG G
Sbjct:  390 KEKKDRVDDALHATRAAVEEGIVAGGGVALVRAIKSLNGLK--VDNVDQDTGIKIVKRSLQEPLRQIVANAGEEGSVIVAKVAEGKN-EFGYDAKLGEYKNMISEGIIDPTKVTRVALENAASVSGMLLTTECVITEIKKEEPAMP---QMPNSGMG 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_RUBXD (60 kDa chaperonin OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=groL PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.162e-27
Identity = 70/148 (47.30%), Postives = 95/148 (64.19%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 446
            KEKK RVEDAL+AT+AA            LL+    V  + + LD DE + GA IV RAL  P++ IA+NAG +GS+V +KV +  +   G+NA TG YEDL+AAG+IDP  V R  L++A+S+A   + +D VV E +E +PAMP G
Sbjct:  389 KEKKHRVEDALSATRAALEEGIVPGGGVALLKAQKAVGELLDELDGDE-RTGARIVYRALEEPIRQIAENAGADGSIVVDKVRAQGD-SIGFNALTGGYEDLVAAGVIDPAMVTRSALQNAASIAGLLVTTDVVVAEPEEEQPAMPGG 534          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_HYPNA (60 kDa chaperonin OS=Hyphomonas neptunium (strain ATCC 15444) GN=groL PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.162e-27
Identity = 68/157 (43.31%), Postives = 95/157 (60.51%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE+K RV+DALNAT+AA            LLR S  +D +     ND+EK G DIV++AL  P++ IA+NAGV GSVV   +L++ +  YG+NA T  Y DL+A G+IDP KVVR  L++A+S+A   + ++  + E  + E A   G P    G G
Sbjct:  390 KERKDRVDDALNATRAAVEEGIVPGGGVALLRSSKNIDVVGL---NDDEKAGIDIVRKALEAPIRQIAENAGVEGSVVVNTILNNKSRSYGFNAQTEEYGDLVAMGVIDPVKVVRSALQNAASIASLLITTEAGIAEAPKKESAGGGGMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CAMFF (60 kDa chaperonin OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=groL PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.162e-27
Identity = 74/155 (47.74%), Postives = 97/155 (62.58%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RV+DALNATKAA            L++  ++V+    +L  DE  +GA+IVKRAL  PL+ IA+NAG +  VV+  V  +D   YG+NAA+G Y D+  AGIIDP KV R  L++A SVA   L ++  V EIKE +PAMP   PM + G
Sbjct:  389 KEKKDRVDDALNATKAAVEEGIVVGGGAALIKAGNRVNL---SLKGDE-LIGAEIVKRALFAPLRQIAENAGFDAGVVANSVSCADCPNYGFNAASGEYVDMFEAGIIDPVKVERIALQNAVSVASLLLTTEATVSEIKEDKPAMP---PMPDMG 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_PROMM (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9313) GN=groL2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.162e-27
Identity = 68/148 (45.95%), Postives = 97/148 (65.54%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 446
            K+KKLR+EDA+NATKAA           TL  L+S +     +  + EE +G++IV+ +L  PL  IA+NAG NG+VV+E V S      GYNAATG+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLTHLASDLQKWANSNLSGEELIGSNIVEASLAAPLMRIAENAGANGAVVAENVKSRPISD-GYNAATGDYIDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKEAAPAG 534          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_PROM3 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9303) GN=groL1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.162e-27
Identity = 68/148 (45.95%), Postives = 97/148 (65.54%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 446
            K+KKLR+EDA+NATKAA           TL  L++ +     +  + EE +GA+IV+ +L  PL  IA+NAG NG+VV+E V S      GYNAATG+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLTHLAADLQKWANSNLSGEELIGANIVEASLAAPLMRIAENAGANGAVVAENVKSRPISD-GYNAATGDYIDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKEAAPAG 534          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_ALKOO (60 kDa chaperonin OS=Alkaliphilus oremlandii (strain OhILAs) GN=groL PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.518e-27
Identity = 66/148 (44.59%), Postives = 98/148 (66.22%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 446
            KE+KLR+EDALNAT+A            +L+ +   V+A+ ET + DE + G  I++RAL  PL+ IA NAG+ GSV+ EKV+SS+    G++A T  Y +++ AGI+DPTKV R  L++A+SV+   L ++  +V+IK  EP+MP G
Sbjct:  388 KERKLRIEDALNATRAGVEEGMVAGGGASLVHVIPAVEALLETTEGDE-RTGVKIIRRALEEPLRQIAANAGLEGSVIVEKVMSSEKG-IGFDALTEKYVNMIEAGIVDPTKVTRSALQNAASVSAMLLTTEGAIVDIKSDEPSMPGG 533          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH604_RHIEC (60 kDa chaperonin 4 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL4 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.518e-27
Identity = 71/154 (46.10%), Postives = 95/154 (61.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 458
            KEKK RV+DAL+AT+AA            LLR    +D IK    ND+++VG +IV+RAL  P + IA+NAG  GSVV  K+    +  YG+NA TG + DL A G+IDP KVVR  L+ ASS+A   + ++ ++ E   K+  PAMPAG  MD
Sbjct:  390 KEKKDRVDDALHATRAAVEEGILPGGGVALLRAVKALDNIKTA--NDDQRVGVEIVRRALEAPARQIAENAGAEGSVVVGKLREKSDFSYGWNAQTGEFGDLYAQGVIDPAKVVRTALQDASSIAGLLVTTEAMIAEKPKKDAPPAMPAGAGMD 541          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ACICJ8.897e-2841.4060 kDa chaperonin OS=Acidiphilium cryptum (strain ... [more]
CH601_ANAVT8.897e-2843.6760 kDa chaperonin 1 OS=Anabaena variabilis (strain... [more]
CH60_SULMW1.162e-2745.2260 kDa chaperonin OS=Sulcia muelleri (strain GWSS)... [more]
CH60_RUBXD1.162e-2747.3060 kDa chaperonin OS=Rubrobacter xylanophilus (str... [more]
CH60_HYPNA1.162e-2743.3160 kDa chaperonin OS=Hyphomonas neptunium (strain ... [more]
CH60_CAMFF1.162e-2747.7460 kDa chaperonin OS=Campylobacter fetus subsp. fe... [more]
CH602_PROMM1.162e-2745.9560 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH601_PROM31.162e-2745.9560 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_ALKOO1.518e-2744.5960 kDa chaperonin OS=Alkaliphilus oremlandii (stra... [more]
CH604_RHIEC1.518e-2746.1060 kDa chaperonin 4 OS=Rhizobium etli (strain CFN ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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