CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:234..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_MAGSM (60 kDa chaperonin OS=Magnetococcus sp. (strain MC-1) GN=groL PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.381e-27
Identity = 69/157 (43.95%), Postives = 98/157 (62.42%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE+K RV+DAL+AT+AA            LLR + +         N +++VG +IV RAL  PL++IA NAG  GSVV  +V+ +    +G+NAATG YEDL+A+G+IDP KVVR  L+ A+SVA   + ++ +V E+ + EPAMP G+     G G
Sbjct:  390 KERKDRVDDALHATRAAVEEGIVPGGGVALLR-AREASLTNLQGANHDQQVGINIVTRALEEPLRIIASNAGAEGSVVVNRVVETKETNFGFNAATGVYEDLVASGVIDPAKVVRHALQAAASVAGLMITTEAMVAELPKDEPAMPGGDMGGMGGMG 545          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_DESAA (60 kDa chaperonin OS=Desulfatibacillum alkenivorans (strain AK-01) GN=groL PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.381e-27
Identity = 71/161 (44.10%), Postives = 98/161 (60.87%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE----PAMPAGNPMDNSGYG 473
            KEKK RVEDALNAT+AA            L+R    +DA+ +     E+K+GA +V RAL  PL++IA NAG+ GSVV +KV +++   +GYNA T  YEDL+ AG+IDPTKVVR  L++A S+A   L ++ ++ +  +      PAMP G      G G
Sbjct:  389 KEKKARVEDALNATRAAVEEGIVPGGGVALVRA---IDAVAKAKITGEQKIGARVVMRALEAPLRMIANNAGMEGSVVLDKVKNTEG-SFGYNADTDTYEDLIEAGVIDPTKVVRLALQNACSIAGLMLTTEAMIADKPDENAGGMPAMPGGGMGGMGGMG 545          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_AQUAE (60 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.381e-27
Identity = 68/143 (47.55%), Postives = 95/143 (66.43%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHK---YGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE 422
            KEKK RVEDA++ATKAA            L+R S  ++ +K   DN ++++G DI+K+A+  PLK IA NAG +GSVV EKV+     K   +G+NAATG Y D+  AGIIDPTKVVR  +E+A+SVA T L ++ ++ ++ E
Sbjct:  390 KEKKYRVEDAVHATKAAVEEGIVPGGGVALVRASEALEDLKG--DNHDQQLGIDIIKKAVRTPLKQIAYNAGYDGSVVLEKVIELGKEKGVSWGFNAATGEYVDMYEAGIIDPTKVVRTAIENAASVAGTMLTAEALIADLPE 530          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_RHIEC (60 kDa chaperonin 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.381e-27
Identity = 68/149 (45.64%), Postives = 92/149 (61.74%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAG 446
            KEKK R++DALNAT+AA            LLR S K+ A      ND+++ G +IV+RAL  P + IA+NAG   S+V  K+L  D   YGYNA TG Y D++  GIIDP KVVR  L+ A+SVA   + ++ ++ E+ K+  PAMP G
Sbjct:  390 KEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKISAKGV---NDDQEAGINIVRRALQAPARQIAENAGDEASIVVGKILDKDQDNYGYNAQTGEYGDMIGMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGG 535          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_ERYLH (60 kDa chaperonin 1 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.381e-27
Identity = 68/149 (45.64%), Postives = 98/149 (65.77%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPA-MPA 443
            KE+K RV+DAL+AT+AA            LLR    +D +K    ND+++ G DIV+RAL  P + IA+NAG +G+ +  K+L  D++ +G+NAATG YEDL+ +G+IDP KVVR  L+ A+SVA   + ++ +V E+ KE  PA MPA
Sbjct:  390 KERKDRVDDALHATRAAVEEGILPGGGIALLRALKSLDGLKAA--NDDQQSGIDIVRRALRAPARQIAENAGEDGAYIVGKLLEGDDYNHGFNAATGEYEDLVKSGVIDPAKVVRTALQDAASVASLLITTEALVAELPKEDTPAPMPA 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_WOLRE (60 kDa chaperonin OS=Wolinella recta GN=groL PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.416e-27
Identity = 73/157 (46.50%), Postives = 94/157 (59.87%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE--PEPAMPAGNPMDNSG 467
            KEKK RV+DAL+ATKAA             ++  +KVD     L  DE  +GADIV+RAL  PL+ IA+NAG +  VV+  V  S +  YG+NAATG Y D+  AGIIDP KV R  L++A SVA   L ++  + E+KE  P PAMP  + M   G
Sbjct:  389 KEKKDRVDDALSATKAAVEEGIVIGGGAAFIKAGAKVDL---NLSGDEA-IGADIVRRALTAPLRQIAENAGFDAGVVANSVSVSKDDNYGFNAATGEYVDMFKAGIIDPVKVERIALQNAVSVASLLLTTEATISELKEDKPMPAMPDMSGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_THEM4 (60 kDa chaperonin OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=groL PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.416e-27
Identity = 70/151 (46.36%), Postives = 92/151 (60.93%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-----PAMP 440
            KEKK R+EDAL+AT+AA           TLLR    V+ I E LD DE K+GA IV  AL  P+  IAKNAG +G+++  KVL  D+  YG++A  G Y D+   GIIDP KV R  L++A+S+A   L ++ +VVE  EP+     P MP
Sbjct:  388 KEKKHRIEDALSATRAAVEEGIVPGGGITLLRARKPVEKIVEELDGDE-KIGAKIVYEALSAPINQIAKNAGYDGAIIIHKVLEQDDPAYGFDALKGEYCDMFERGIIDPAKVTRSALQNAASIAGMLLTTEVLVVEKPEPKNNNPMPEMP 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_GLUOX (60 kDa chaperonin OS=Gluconobacter oxydans GN=groL PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.416e-27
Identity = 67/150 (44.67%), Postives = 98/150 (65.33%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KE+K RV+DAL+AT+AA            L R SS +  +  T DND+++VG +IV++AL  PL+ IA NAG +G+V++ KVL ++ + +G++A  G Y+DL+AAGIIDPTKVVR  L+ A+SV    + ++ +V E   PE   PA  P
Sbjct:  390 KERKDRVDDALHATRAAVEEGIVPGGGTALARASSALKGL--TFDNDDQRVGGEIVRKALQAPLRQIAFNAGEDGAVIAGKVLENEGYVFGFDAQKGEYKDLVAAGIIDPTKVVRTALQDAASVGGLLITTEAMVAE--RPEKKAPAAAP 535          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_NITWN (60 kDa chaperonin 2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.416e-27
Identity = 64/151 (42.38%), Postives = 98/151 (64.90%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI---KEPEPAMPAG 446
            KE+K RV+DA++AT+AA            LLR S ++  IK    ND++K G +IV++AL  P + IA NAG +GSV+  K+L  + + YG+++ TG+Y +L++ GIIDPTKVVR  +++A+SVA   + ++ +V E+     P PAMP G
Sbjct:  390 KERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKRIKT--QNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGDYGNLISKGIIDPTKVVRTAIQNAASVASLLITTEAMVAELPKKNSPAPAMPGG 538          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_ANASP (60 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 7120) GN=groL1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.416e-27
Identity = 68/158 (43.04%), Postives = 95/158 (60.13%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 476
            K+KKLR+EDA+NATKAA           TL  L+ +++    +   DEE  GA IV RAL  PLK IA+NAG NG+V++E+V        G+NAAT  + D+  AGI+DP KV R  L++A+S+A   L ++C+VV+  EP+   PAG       + Y
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLTPELEVWANSNLKDEELTGALIVARALPAPLKRIAENAGQNGAVIAERV-KEKAFNVGFNAATNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEPKDNAPAGAGAGGGDFDY 544          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_MAGSM3.381e-2743.9560 kDa chaperonin OS=Magnetococcus sp. (strain MC-... [more]
CH60_DESAA3.381e-2744.1060 kDa chaperonin OS=Desulfatibacillum alkenivoran... [more]
CH60_AQUAE3.381e-2747.5560 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3... [more]
CH601_RHIEC3.381e-2745.6460 kDa chaperonin 1 OS=Rhizobium etli (strain CFN ... [more]
CH601_ERYLH3.381e-2745.6460 kDa chaperonin 1 OS=Erythrobacter litoralis (st... [more]
CH60_WOLRE4.416e-2746.5060 kDa chaperonin OS=Wolinella recta GN=groL PE=3 ... [more]
CH60_THEM44.416e-2746.3660 kDa chaperonin OS=Thermosipho melanesiensis (st... [more]
CH60_GLUOX4.416e-2744.6760 kDa chaperonin OS=Gluconobacter oxydans GN=groL... [more]
CH602_NITWN4.416e-2742.3860 kDa chaperonin 2 OS=Nitrobacter winogradskyi (s... [more]
CH601_ANASP4.416e-2743.0460 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 71... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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