CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:234..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_THEP1 (60 kDa chaperonin OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=groL PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 65/147 (44.22%), Postives = 95/147 (64.63%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 443
            KEKK R+EDAL+AT+AA           TLLR    V+ + E L+ DE K+GA IV +AL  P+K IA+NAG +G+V+ EK+LS+D+  YG++A  G Y ++   GIIDP KV R  L++A+S+A   L ++ ++VE  E +   P+
Sbjct:  388 KEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEELEGDE-KIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDPAYGFDALRGEYCNMFERGIIDPAKVTRSALQNAASIAGMLLTTEVLIVEKPEEKKETPS 533          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_DESDA (60 kDa chaperonin OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=groL PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 72/157 (45.86%), Postives = 97/157 (61.78%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDALNAT+AA            L+R++  +  IK    +D+E  G +I++RA+  PL+ IA NAG  GS+V EKV    +  +G+NAATG YEDL+ AG+IDP KV R  L++A+SVA   L ++C + E  +PEP   A  P D  G G
Sbjct:  390 KEKKDRVEDALNATRAAVEEGIVPGGGTALIRVAKVLCDIKPA--DDDELAGVNIIRRAIEEPLRQIALNAGFEGSIVVEKVREGKDG-FGFNAATGEYEDLIKAGVIDPKKVTRTALQNAASVASLLLTTECAIAE--KPEPKKDAAMP-DMGGMG 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CLOPH (60 kDa chaperonin OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=groL PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 68/150 (45.33%), Postives = 91/150 (60.67%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KEKKLR+EDAL AT+AA             +  S +V  +   L+ DE + GA I+ +AL  PL  IA+NAG+ G+V+  KV        G+NA T  Y D++  GI+DP+KV R  L++A+SVA TFL ++  V  IKEP PAMPAG P
Sbjct:  388 KEKKLRMEDALAATRAAVEEGIIAGGGSAYIHASKEVAKLAAKLEGDE-RTGAQIILKALEAPLSCIAQNAGLEGAVIVNKVREKKTG-VGFNALTEKYVDMVEDGILDPSKVTRSALQNATSVASTFLTTEAAVASIKEPAPAMPAGGP 535          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BDEBA (60 kDa chaperonin OS=Bdellovibrio bacteriovorus GN=groL PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 66/155 (42.58%), Postives = 97/155 (62.58%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RVEDALNAT+AA            LLR S+K+D  K +   +EE+ GA I+KRA   P++ IA NAG++G++V +++L + +  +G+NA +  Y DL+  G+IDP KVVRC L +A+SV+   L ++ ++ E  + E A PA    D  G
Sbjct:  389 KEKKHRVEDALNATRAAVEEGIVAGGGTALLRASTKIDKSKFS---EEEQFGATIIKRACEEPIRQIAANAGLDGAIVLDRILQNKSTTWGFNAYSDEYTDLIKDGVIDPVKVVRCALTNAASVSSLMLTTETMIAEAPKKESAAPAMPGHDGMG 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH605_SINMW (60 kDa chaperonin 5 OS=Sinorhizobium medicae (strain WSM419) GN=groL5 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 67/149 (44.97%), Postives = 91/149 (61.07%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAG 446
            KEKK R++DALNAT+AA            LLR S K+    E   ND++  G +IV+RAL  P + I +NAG   S+V  K+L  D   +GYNA TG Y D++A GIIDP KVVR  L+ A+SVA   + ++ ++ E+ K+  PAMP G
Sbjct:  390 KEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKITVKGE---NDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKDTDDFGYNAQTGEYGDMIAMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGG 535          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_ROSDO (60 kDa chaperonin 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=groL2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 66/157 (42.04%), Postives = 97/157 (61.78%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE+K RV+DALNAT+AA            L++    ++ +  T DN+++ VG  IV++AL  PL+ IA+NAGV+GSVV+ K+  SD+ K+G+NA T  Y D+ A G+IDP KVVR  L+ A+S+A   + ++ +V +    E A P G   D  G G
Sbjct:  390 KERKDRVDDALNATRAAVQEGIVVGGGVALVQAGKHLEGL--TGDNNDQNVGISIVRKALEAPLRQIAENAGVDGSVVAGKIRESDDLKFGFNAQTEEYGDMFAFGVIDPAKVVRTALQDAASIAGLLITTEAMVADRPAKEGAAPGGGMPDMGGMG 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_RHILE (60 kDa chaperonin 2 OS=Rhizobium leguminosarum GN=groL2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 68/154 (44.16%), Postives = 93/154 (60.39%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 458
            KEKK RV+DAL+AT+AA            LLR    +DA+K    N +++VG DIV+RA+  P + IA+NAG  GSV+  K+       YG+NA TG Y DL A G+IDP KVVR  L+ A+S+A   + ++ ++ E   K+  P MPAG  MD
Sbjct:  390 KEKKDRVDDALHATRAAVEEGILPGGGVALLRAVKALDAVKTA--NGDQRVGVDIVRRAVEAPARQIAENAGAEGSVIVGKLREKSEFSYGWNAQTGEYGDLYAQGVIDPAKVVRTALQDAASIAGLLVTTEAMIAEKPKKDAPPPMPAGPGMD 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_PROMA (60 kDa chaperonin 2 OS=Prochlorococcus marinus GN=groL2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 66/148 (44.59%), Postives = 96/148 (64.86%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 446
            K+KKLR+EDA+NATKAA           TL  L+S+V +   +  + EE +GA+IV+ AL  PL  IA+NAG NG+V++E V S   +  GYNAA+G Y D+++AGI+DP KV R  L++ASS+A   L ++C+V ++ E +     G
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLASEVHSWAASSLSGEELIGANIVEAALTAPLMRIAENAGANGAVIAEHVKSKPLND-GYNAASGEYVDMLSAGIVDPAKVTRSGLQNASSIAGMVLTTECIVADLPEKKDVASGG 534          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_SINMW (60 kDa chaperonin 1 OS=Sinorhizobium medicae (strain WSM419) GN=groL1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 67/149 (44.97%), Postives = 91/149 (61.07%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAG 446
            KEKK R++DALNAT+AA            LLR S K+    E   ND++  G +IV+RAL  P + I +NAG   S+V  K+L  D   +GYNA TG Y D++A GIIDP KVVR  L+ A+SVA   + ++ ++ E+ K+  PAMP G
Sbjct:  390 KEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKITVKGE---NDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKDTDDFGYNAQTGEYGDMIAMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGG 535          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_RHOPA (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris GN=groL1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 70/156 (44.87%), Postives = 93/156 (59.62%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 467
            KEKK RVEDALNAT+AA            LLR    V  I    DN + + G +IV +AL  P++ IA+NAGV GS+V  K+L +    +G++A T  Y D++A GI+DP KVVR  L+ ASSVA   + ++ +V E+ K   PAMPAG  M   G
Sbjct:  390 KEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRISN--DNPDVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKTETFGFDAQTEEYVDMLAKGIVDPAKVVRTALQDASSVASLLVTTEAMVAELPKADAPAMPAGGGMGGMG 543          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_THEP19.837e-2744.2260 kDa chaperonin OS=Thermotoga petrophila (strain... [more]
CH60_DESDA9.837e-2745.8660 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH60_CLOPH9.837e-2745.3360 kDa chaperonin OS=Clostridium phytofermentans (... [more]
CH60_BDEBA9.837e-2742.5860 kDa chaperonin OS=Bdellovibrio bacteriovorus GN... [more]
CH605_SINMW9.837e-2744.9760 kDa chaperonin 5 OS=Sinorhizobium medicae (stra... [more]
CH602_ROSDO9.837e-2742.0460 kDa chaperonin 2 OS=Roseobacter denitrificans (... [more]
CH602_RHILE9.837e-2744.1660 kDa chaperonin 2 OS=Rhizobium leguminosarum GN=... [more]
CH602_PROMA9.837e-2744.5960 kDa chaperonin 2 OS=Prochlorococcus marinus GN=... [more]
CH601_SINMW9.837e-2744.9760 kDa chaperonin 1 OS=Sinorhizobium medicae (stra... [more]
CH601_RHOPA9.837e-2744.8760 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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