CF835722

Overview
NameCF835722
Unique NameCF835722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1125 contig Csv1_Contig1125:12..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.832e-41
Identity = 97/238 (40.76%), Postives = 129/238 (54.20%), Query Frame = -3
Query:  147 VASIVTPQFFDGIK-NQAAASCAGKSFYTRDAFLNAAKAYPQFG-SGSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 752
            V SIV    F+ +  ++   +C  + FYT +AFL AA A+P FG +G+ E  KRE+AAF    +HET                C+ +E N  + YC + + ++PC PG+ YYGRGPIQL+ N NYG AG+AIG D L  P+ VA D  VSFKTALWFWMT      + H V+                 G+G     +NG +ECG     +V  RIG+Y+ YC  FG+  G NL C N
Sbjct:   89 VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYC-QPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYN 325          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.241e-41
Identity = 96/237 (40.51%), Postives = 127/237 (53.59%), Query Frame = -3
Query:  147 SIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH--------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMN---------------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 746
            S++T + FD  + ++    C  + FYT DAF+ AAK++P F + G     KRE+AAF A  +HET                 CY  E+N ++ YC + +  YPC PGK Y+GRGP+QLT N NYG  G+AIG D L  P+ +A DP +SFK+A WFWMT   P  +                      GFG     ING +ECG    A+V+ RIG+YK YC+  GV  G NL C N
Sbjct:   74 SLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWAAPDGPYTWGYCYNRELNPAD-YC-QWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYN 308          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.076e-40
Identity = 95/240 (39.58%), Postives = 131/240 (54.58%), Query Frame = -3
Query:  147 NVASIVTPQFFDGIKNQAAAS-CAGKS-FYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 755
            ++  +++   FD + N    + C GK+ FY+ +AF+ AA ++P FG+ G     KREIAAF A  +HET                C++ E      YC   + Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA DPV+SFK+A+WFWMT      + H V+                 GFG     ING +ECG    ++VQ RIG+Y+ YC   GV+PG NL C N
Sbjct:   71 DLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSS-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGN 309          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.076e-40
Identity = 95/240 (39.58%), Postives = 132/240 (55.00%), Query Frame = -3
Query:  147 NVASIVTPQFFDGIKNQAAAS-CAGK-SFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 755
            ++  +++   FD + N    + C GK +FY+ +AF++AA ++P FG+ G     KREIAAFFA  +HET                C++ E      YC   + Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA D V+SFK+A+WFWMT      + H V+                 GFG     ING +ECG    ++VQ RIG+Y+ YC   GV+PG NL C N
Sbjct:   67 DLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSS-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGN 305          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.132e-40
Identity = 96/236 (40.68%), Postives = 128/236 (54.24%), Query Frame = -3
Query:  153 VASIVTPQFFDGIK-NQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 752
            V ++V+ + F+ +  ++  A+C  + FYT DA + AA A+P F + G  E  KRE+AAF    +HET                C+ EEI  +  YC   + ++PC P K Y+GRGPIQL+ N NYG AG+AIG D L  PE VA DPVVSFKTALWFWMT      + H V+                 G+G     ING +ECG     +V  RIG+Y+ YC+  G+  G NL C
Sbjct:   86 VEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYC-VPSAEWPCAPDKKYFGRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDC 320          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 3.132e-40
Identity = 90/219 (41.10%), Postives = 117/219 (53.42%), Query Frame = -3
Query:  147 SCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH--------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMN---------------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 695
            +C  + FYT DAF+ AA+++P F + G     KREIAAF A  +HET                 CY  E+N  + YC   +  YPC PGK Y+GRGP+QL+ N NYG  G+AIG D L  P+ ++ DP +SFK+A WFWMT   P  +                      G+G     ING +ECG    AQV+ RIG+YK YC+  GV+ G NL C N
Sbjct:   72 ACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYC-ASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYN 289          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.132e-40
Identity = 90/219 (41.10%), Postives = 117/219 (53.42%), Query Frame = -3
Query:  147 SCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH--------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMN---------------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 695
            +C  + FYT DAF+ AA+++P F + G     KREIAAF A  +HET                 CY  E+N  + YC   +  YPC PGK Y+GRGP+QL+ N NYG  G+AIG D L  P+ ++ DP +SFK+A WFWMT   P  +                      G+G     ING +ECG    AQV+ RIG+YK YC+  GV+ G NL C N
Sbjct:   94 ACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYC-ASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYN 311          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.342e-40
Identity = 94/240 (39.17%), Postives = 131/240 (54.58%), Query Frame = -3
Query:  147 NVASIVTPQFFDGIKNQAAAS-CAGKS-FYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 755
            ++  +++   FD + N    + C GK+ FY+ +AF++AA ++P FG+ G     KREIAAF A  +HET                C++ E      YC   + Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA D V+SFK+A+WFWMT      + H V+                 GFG     ING +ECG    ++VQ RIG+Y+ YC   GV+PG NL C N
Sbjct:   67 DLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSS-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGN 305          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.030e-39
Identity = 105/246 (42.68%), Postives = 130/246 (52.85%), Query Frame = -3
Query:  147 ILALAFP-----TKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGHLCYIEEINKSNRYC--DEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 794
            +LAL+F      T  + QNV SIVT   FD  +KN+  A C    FYT DAF+ AA ++P FG+ G     K+EIAAFF   +HET       +   +  YC   E N+      G  YYGRGPIQLTG  NY  AGKAI  D +  P+ VA D  VSFKTA+WFWMT      + H V+                 G+G     ING +ECG  Q A+V+ RIGYY+   +   VAPG NL C N
Sbjct:    7 VLALSFVVFLFLTGTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTLSPDGPYAGGYCFLREGNQM-----GNGYYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYN 247          
BLAST of CF835722 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.030e-39
Identity = 99/246 (40.24%), Postives = 125/246 (50.81%), Query Frame = -3
Query:  153 LAFPTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHET------------GHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVM---------------NQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 785
            L F T    Q+V +IVT   F+  +KN+    C  K FYT DAF+ AA ++P FG+ G     K+EIAAFF   +HET            G  C++ E N+                G  +YGRGPIQLTG  NY  AG+AIG D +  P+ VA D  VSFKTA+WFWMT      + H V+                 G+G     ING +ECG  Q  QV+ RIG+Y+ YC    VAPG NL C
Sbjct:    8 LLFLTGSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSADGPFAGGYCFVREGNQM---------------GSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDC 238          
The following BLAST results are available for this feature:
BLAST of CF835722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI2_ORYSJ4.832e-4140.76Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_THECC8.241e-4140.51Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIC_SOLLC1.076e-4039.58Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI1_SOLTU1.076e-4039.58Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI9_ORYSJ3.132e-4040.68Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_GOSHI3.132e-4041.10Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI3.132e-4041.10Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI3_SOLTU5.342e-4039.17Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_PETHY2.030e-3942.68Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIB_SOLLC2.030e-3940.24Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01M08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835722 ID=CF835722; Name=CF835722; organism=Citrus sinensis; type=EST; length=853bp
TTTTTTTTTTTTTTTTTAAGCATAAAATATGGTCGGCAACACCCTTTTAT
TACTTCAATTTATTTTGTTTTAGGTATATGAAACCACCCTATATTATAAA
ATTACACCACATTATTTCAACAAGCCAGTGAAGTATCGGCGAAAACATTT
TAACAAGAGAGATTTGGGCCAGGAGCAACACCAAATTTGTTGCAATAATC
CTTATAATATCCAATGCGAGCTTGAACCTGAGCAGGTTGCTTGCCACCGC
ATTCAACGGCACCATTGATTCTCTGAATTGTTGCACCAAAACCTTGGTTC
ATAACTGGGTGCACATTGGTCATCCAAAACCACAAGGCAGTCTTAAATGA
CACAACGGGGTCCTTGGCCACCGTTTCCGGAGCTCTTAATCCGTCAAACC
CGATGGCTTTTCCGGCAGCTCCGTAGTTTCCATTTCCGGTGAGTTGGATC
GGTCCACGGCCGTAGTAGAACTTTCCGGGAACACATGGGTACTGTTTGTT
TTGTTCATCACAGTACCGGTTGGACTTGTTAATCTCTTCTATGTAGCACA
AATGTCCAGTTTCATGAGTGACGTGTGCAAAAAATGCAGCAATCTCACGC
TTCGAAACTTCAGGAGAGCCGCTACCAAATTGAGGATAAGCCTTGGCAGC
ATTCAGAAACGCATCTCTCGTGTAGAAGCTCTTGCCGGCACAACTCGCGG
CTGCCTGATTCTTTATGCCGTCGAAGAACTGGGGAGTCACAATGCTAGCA
ACATTTTGACACATTACTTTGGTGGGAAAAGCTAGGGCAAGAATGCCCAC
AAGAGCAAAGGTTACAATATTTTTTTTCATGTTAAGTGGAGCCATTTTGT
TTA
back to top