CF835723

Overview
NameCF835723
Unique NameCF835723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1125 contig Csv1_Contig1125:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.860e-37
Identity = 89/227 (39.21%), Postives = 119/227 (52.42%), Query Frame = 2
Query:  101 MCQNVASIVTPQFFDGIK-NQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            + QN++S+++   F+ I  ++   +C  K FYT +AF+ A K +  FG+ G      +EIAAF A  +HET                CY  E      YC   ++Q+PC PGK Y+GRGPIQ++ N NYGAAG AIG + L  P+ VA D VVSFKTALWFWMT      + H V+                 GFG     ING +EC     A +  RIG+Y+ YC
Sbjct:    1 LSQNISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYC-ASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYC 226          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.860e-37
Identity = 91/223 (40.81%), Postives = 121/223 (54.26%), Query Frame = 2
Query:  113 VASIVTPQFFDGIK-NQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            V ++V+ + F+ +  ++  A+C  + FYT DA + AA A+P F + G  E  KRE+AAF    +HET                C+ EEI  +  YC   + ++PC P K Y+GRGPIQL+ N NYG AG+AIG D L  PE VA DPVVSFKTALWFWMT      + H V+                 G+G     ING +ECG     +V  RIG+Y+ YC
Sbjct:   86 VEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYC-VPSAEWPCAPDKKYFGRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYC 307          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.290e-37
Identity = 90/223 (40.36%), Postives = 121/223 (54.26%), Query Frame = 2
Query:  113 VASIVTPQFFDGIK-NQAAASCAGKSFYTRDAFLNAAKAYPQFG-SGSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            V SIV    F+ +  ++   +C  + FYT +AFL AA A+P FG +G+ E  KRE+AAF    +HET                C+ +E N  + YC + + ++PC PG+ YYGRGPIQL+ N NYG AG+AIG D L  P+ VA D  VSFKTALWFWMT      + H V+                 G+G     +NG +ECG     +V  RIG+Y+ YC
Sbjct:   89 VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYC-QPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYC 310          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 8.290e-37
Identity = 83/204 (40.69%), Postives = 108/204 (52.94%), Query Frame = 2
Query:  170 SCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH--------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMN---------------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            +C  + FYT DAF+ AA+++P F + G     KREIAAF A  +HET                 CY  E+N  + YC   +  YPC PGK Y+GRGP+QL+ N NYG  G+AIG D L  P+ ++ DP +SFK+A WFWMT   P  +                      G+G     ING +ECG    AQV+ RIG+YK YC
Sbjct:   72 ACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYC-ASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYC 274          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.290e-37
Identity = 83/204 (40.69%), Postives = 108/204 (52.94%), Query Frame = 2
Query:  170 SCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH--------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMN---------------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            +C  + FYT DAF+ AA+++P F + G     KREIAAF A  +HET                 CY  E+N  + YC   +  YPC PGK Y+GRGP+QL+ N NYG  G+AIG D L  P+ ++ DP +SFK+A WFWMT   P  +                      G+G     ING +ECG    AQV+ RIG+YK YC
Sbjct:   94 ACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYC-ASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYC 296          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.414e-36
Identity = 87/225 (38.67%), Postives = 123/225 (54.67%), Query Frame = 2
Query:  110 NVASIVTPQFFDGIKNQAAAS-CAGK-SFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            ++  +++   FD + N    + C GK +FY+ +AF++AA ++P FG+ G     KREIAAFFA  +HET                C++ E      YC   N Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA D ++SFK+A+WFWMT      + H V+                 GFG     ING +ECG    ++VQ RIG+Y+ YC
Sbjct:   65 DLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSN-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYC 288          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.114e-36
Identity = 87/225 (38.67%), Postives = 122/225 (54.22%), Query Frame = 2
Query:  110 NVASIVTPQFFDGIKNQAAAS-CAGKS-FYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            ++  +++   FD + N    + C GK+ FY+ +AF+ AA ++P FG+ G     KREIAAF A  +HET                C++ E      YC   + Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA DPV+SFK+A+WFWMT      + H V+                 GFG     ING +ECG    ++VQ RIG+Y+ YC
Sbjct:   71 DLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSS-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYC 294          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.114e-36
Identity = 87/225 (38.67%), Postives = 123/225 (54.67%), Query Frame = 2
Query:  110 NVASIVTPQFFDGIKNQAAAS-CAGK-SFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            ++  +++   FD + N    + C GK +FY+ +AF++AA ++P FG+ G     KREIAAFFA  +HET                C++ E      YC   + Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA D V+SFK+A+WFWMT      + H V+                 GFG     ING +ECG    ++VQ RIG+Y+ YC
Sbjct:   67 DLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSS-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYC 290          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.197e-35
Identity = 97/228 (42.54%), Postives = 121/228 (53.07%), Query Frame = 2
Query:   71 ILALAFP-----TKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGHLCYIEEINKSNRYC--DEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT------NVHPVMN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYK 664
            +LAL+F      T  + QNV SIVT   FD  +KN+  A C    FYT DAF+ AA ++P FG+ G     K+EIAAFF   +HET       +   +  YC   E N+      G  YYGRGPIQLTG  NY  AGKAI  D +  P+ VA D  VSFKTA+WFWMT      + H V+                 G+G     ING +ECG  Q A+V+ RIGYY+
Sbjct:    7 VLALSFVVFLFLTGTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTLSPDGPYAGGYCFLREGNQM-----GNGYYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYR 229          
BLAST of CF835723 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.197e-35
Identity = 93/226 (41.15%), Postives = 120/226 (53.10%), Query Frame = 2
Query:  113 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS--GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNR--YCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHPVMN---------------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYC 673
            VASIV+   FD  + ++  A+C   +FYT DAF+ AA A+P F +  G  + +KRE+AAF A  +HET                C+ EE   +    YC +Q+ Q+PC  GK YYGRGPIQL+ N NYG AG+AIG D L  P+ VA D  VSF TA WFWMT   P  +                      G+G     ING +ECG  +  +V  RIG+YK YC
Sbjct:   81 VASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYC-QQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYC 305          
The following BLAST results are available for this feature:
BLAST of CF835723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHID_SOLLC4.860e-3739.21Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI9_ORYSJ4.860e-3740.81Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_ORYSJ8.290e-3740.36Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_GOSHI8.290e-3740.69Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI8.290e-3740.69Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI2_SOLTU1.414e-3638.67Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SOLLC4.114e-3638.67Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI1_SOLTU4.114e-3638.67Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_PETHY1.197e-3542.54Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI12_ORYSJ1.197e-3541.15Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835723 ID=CF835723; Name=CF835723; organism=Citrus sinensis; type=EST; length=673bp
TTTCTCTACTCCTAATAAAATGGCTCCACTTAACATGAAAAAAAATATTG
TAACCTTTGCTCTTGTGGGCATTCTTGCCCTAGCTTTTCCCACCAAAGTA
ATGTGTCAAAATGTTGCTAGCATTGTGACTCCCCAGTTCTTCGACGGCAT
AAAGAATCAGGCAGCCGCGAGTTGTGCCGGCAAGAGCTTCTACACGAGAG
ATGCGTTTCTGAATGCTGCCAAGGCTTATCCTCAATTTGGTAGCGGCTCT
CCTGAAGTTTCGAAGCGTGAGATTGCTGCATTTTTTGCACACGTCACTCA
TGAAACTGGACATTTGTGCTACATAGAAGAGATTAACAAGTCCAACCGGT
ACTGTGATGAACAAAACAAACAGTACCCATGTGTTCCCGGAAAGTTCTAC
TACGGCCGTGGACCGATCCAACTCACCGGAAATGGAAACTACGGAGCTGC
CGGAAAAGCCATCGGGTTTGACGGATTAAGAGCTCCGGAAACGGTGGCCA
AGGACCCCGTTGTGTCATTTAAGACTGCCTTGTGGTTTTGGATGACCAAT
GTGCACCCAGTTATGAACCAAGGTTTTGGTGCAACAATTCAGAGAATCAA
TGGTGCCGTTGAATGCGGTGGCAAGCAACCTGCTCAGGTTCAAGCTCGCA
TTGGATATTATAAGGATTATTGC
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